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scn_reactorb_scaffold_84781

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_84781_1
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(151..552)
DNA (402bp) protein (134aa)
Predicted membrane protein n=3 Tax=Clostridiales RepID=D4MXY2_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CDA31875.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
scn_reactorb_scaffold_84781_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(629..1948)
DNA (1320bp) protein (440aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI000300F724
peptidase M18
scn_reactorb_scaffold_84781_3
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2179..2454)
DNA (276bp) protein (92aa)
30S ribosomal protein S18 n=1 Tax=Clostridium sp. BL8 RepID=T0MZU6_9CLOT
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
scn_reactorb_scaffold_84781_4
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2470..2931)
DNA (462bp) protein (154aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B4K0_CLOA9
ssb2; ssDNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
scn_reactorb_scaffold_84781_5
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2950..3273)
DNA (324bp) protein (108aa)
30S ribosomal protein S6 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CTM6_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
ribosomal protein S6
scn_reactorb_scaffold_84781_6
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3414..3779)
DNA (366bp) protein (122aa)
Predicted transcriptional regulator, xre family n=1 Tax=Anoxybacillus flavithermus (strain DSM 21510 / WK1) RepID=B7GM93_ANOFW
xre; XRE family transcriptional regulator
Predicted transcriptional regulator, xre family {ECO:0000313|EMBL:ACJ34995.1}; TaxID=491915 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus flavithermus (strain DSM 21510 / WK1).;"
scn_reactorb_scaffold_84781_7
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4229..9358
DNA (5130bp) protein (1710aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KS87_CLOPH
peptidase S8/S53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ABX42119.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
scn_reactorb_scaffold_84781_8
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9492..10094)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOC99991.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
scn_reactorb_scaffold_84781_9
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10370..10897)
DNA (528bp) protein (176aa)
Ribosomal subunit interface protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AS95_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:EOC99992.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
yhbH; ribosome-associated protein Y (PSrp-1)
scn_reactorb_scaffold_84781_10
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10984..11706)
DNA (723bp) protein (241aa)
Phosphoribosyltransferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CRR9_9CLOT
Phosphoribosyltransferase {ECO:0000313|EMBL:KGG79974.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
phosphoribosyltransferase
scn_reactorb_scaffold_84781_11
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11746..13992)
DNA (2247bp) protein (749aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
recombinase D (EC:3.1.11.5)
RecD-like DNA helicase YrrC n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAQ7_9CLOT
scn_reactorb_scaffold_84781_12
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14133..15731
DNA (1599bp) protein (533aa)
Stage V sporulation protein B n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUM6_9CLOT
Stage V sporulation protein B {ECO:0000313|EMBL:EOD00347.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
polysaccharide biosynthesis protein
scn_reactorb_scaffold_84781_13
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15743..16795
DNA (1053bp) protein (351aa)
Nucleoside triphosphate pyrophosphohydrolase MazG n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AT91_9CLOT
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:EOD00348.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
MazG family protein
scn_reactorb_scaffold_84781_14
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16859..17134
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W3_9FIRM
DNA-binding protein {ECO:0000313|EMBL:KGG80635.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
histone family protein DNA-binding protein
scn_reactorb_scaffold_84781_15
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17219..18667)
DNA (1449bp) protein (483aa)
succinate-semialdehyde dehydrogenase n=1 Tax=Clostridium arbusti RepID=UPI00028820E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA70745.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
scn_reactorb_scaffold_84781_16
unknown

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comp(18621..18818)
DNA (198bp) protein (66aa)

This feature has no annotations

scn_reactorb_scaffold_84781_17
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18842..19957)
DNA (1116bp) protein (372aa)
NAD-dependent 4-hydroxybutyrate dehydrogenase n=2 Tax=Clostridium kluyveri RepID=4HDB_CLOK5
4hbD; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH07713.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
scn_reactorb_scaffold_84781_18
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19987..21348)
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI000316D2C3
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:AKA70746.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
scn_reactorb_scaffold_84781_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21400..22851)
DNA (1452bp) protein (484aa)
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase {ECO:0000313|EMBL:EQF24035.1}; EC=5.3.3.3 {ECO:0000313|EMBL:EQF24035.1};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase n=1 Tax=Clostridium difficile CD160 RepID=T3DBW0_CLODI
abfD; gamma-aminobutyrate metabolism dehydratase/isomerase
scn_reactorb_scaffold_84781_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23011..23295)
DNA (285bp) protein (95aa)
NifU-like protein n=1 Tax=Clostridium beijerinckii RepID=UPI000364EED2
NifU domain-containing protein {ECO:0000313|EMBL:AJG98998.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
NifU domain-containing protein
scn_reactorb_scaffold_84781_21
Parvimonas micra, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23526..24431)
DNA (906bp) protein (302aa)
Putative membrane protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIL2_9FIRM
membrane protein
Putative membrane protein {ECO:0000313|EMBL:EDP24695.1}; TaxID=411465 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas micra ATCC 33270.;"
scn_reactorb_scaffold_84781_22
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25185..26297
DNA (1113bp) protein (371aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JXA3_9FIRM
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:EOS35882.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Sua5/YciO/YrdC/YwlC family protein
scn_reactorb_scaffold_84781_23
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26355..26795
DNA (441bp) protein (147aa)
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:AFS77272.1}; EC=5.3.1.6 {ECO:0000313|EMBL:AFS77272.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Ribose 5-phosphate isomerase B n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWW6_CLOA9
scn_reactorb_scaffold_84781_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27016..28047
DNA (1032bp) protein (344aa)
tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase TagO (EC:2.7.8.33)
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AYI1_9CLOT
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:EOD01757.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
scn_reactorb_scaffold_84781_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28065..28244
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_1_57FAA RepID=F7JHI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67646.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
scn_reactorb_scaffold_84781_26
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28284..28502
DNA (219bp) protein (73aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Salmonella choleraesuis RepID=U3GJZ7_SALCE
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:KKA50047.1}; TaxID=59202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. salamae.;"
UDP-N-acetylglucosamine 2-epimerase
Displaying 26 items

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