ggKbase home page

scn_reactorb_scaffold_29609_10

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: 9426..9959

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70, region 4 family protein n=1 Tax=Clostridium difficile CD69 RepID=T3ACM2_CLODI similarity UNIREF
DB: UNIREF100
  • Identity: 35.6
  • Coverage: 188.0
  • Bit_score: 95
  • Evalue 3.90e-17
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:KIE48177.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 35.3
  • Coverage: 173.0
  • Bit_score: 104
  • Evalue 1.20e-19
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 36.5
  • Coverage: 170.0
  • Bit_score: 95
  • Evalue 1.10e-17

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium argentinense → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 534
TTGAAAAAATCATTATTATACAATTTATTTGTACAAGCCAAAGGTGGTAATGAATCGGCAAAGCTAGAGATTTACAAGAAATTTCTACCTTGCATCAAAAAATTTGCAAGGAAATTGTGTTATGAAGAAGCTGAAACTGACCTTGTTATATCCTTACTTGAATTTATAAATAACATCAGTTTAAGAAAATTCAAGAATAGAAGTGATGGAGAGATATTTTTATATGTTTACAGTTTCATAAAATGTAAATATCTAAATATTATAAAAGCCTTAAATAATAAAAAAATTACAACAGTACCTTTAAAGACAGATATTAAGTATTATGATTACTATAAAAAAATTGAATCAGAATATATTTTATGGTTGTTAAGCGAACTTTCTGATATACAGAAAAAAGTAATAGTTGGTAAATATATATACAATTATAGTAATATCAAGCTGTCTAAAGTGTGTGGTATTTCTAGACAAGCTATCTTCAGGTATAAGAAAAAAGCTTTAGAAATTATTAAATTAAAGCTTCTTACTATAAAATAA
PROTEIN sequence
Length: 178
LKKSLLYNLFVQAKGGNESAKLEIYKKFLPCIKKFARKLCYEEAETDLVISLLEFINNISLRKFKNRSDGEIFLYVYSFIKCKYLNIIKALNNKKITTVPLKTDIKYYDYYKKIESEYILWLLSELSDIQKKVIVGKYIYNYSNIKLSKVCGISRQAIFRYKKKALEIIKLKLLTIK*