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scn_reactorb_scaffold_77812_5

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(3803..4264)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FIT8_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 52.9
  • Coverage: 153.0
  • Bit_score: 166
  • Evalue 1.20e-38
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EMS70116.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 153.0
  • Bit_score: 166
  • Evalue 1.70e-38
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 53.0
  • Coverage: 151.0
  • Bit_score: 163
  • Evalue 3.80e-38

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Taxonomy

[Clostridium] termitidis → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 462
ATGTCTATTGACATAAATGCGCATTATGATTGTATCTACAAATATTGTTATTTCAAGATTAAGAATTTACATATTGCAGAGGATTTAGCTCAGGAAACATTTCTTAAGTTTATTAAGCAAGGCAGTTATGTTGATAGAGACAAGCCTCTTGCATATTTGTATACAATTGCTAAAAATACTTGCATAGATTATATGAGAAAGCCTGAATATGTAGAACTAAGCGAAGAAATATTAGCAGAGAATGATTTTGAAAAAATTGAGCTTAAAAGAGTAATTAGAGAAGCTATAGATACTCTGCCAAGCGATGAACAGGAATTAGTTTTTCTAAGATATGTAAATGAATTGAAAATTGGAGATATTGCAAAGATTACAGGCGTCTCTCGATTTTCAATTAATAGAAAATTAAAAAAAGCCTTAGAAGGATTGAAGCTTGTATTAAGAGAGGAGGATTTTCTTGAATAA
PROTEIN sequence
Length: 154
MSIDINAHYDCIYKYCYFKIKNLHIAEDLAQETFLKFIKQGSYVDRDKPLAYLYTIAKNTCIDYMRKPEYVELSEEILAENDFEKIELKRVIREAIDTLPSDEQELVFLRYVNELKIGDIAKITGVSRFSINRKLKKALEGLKLVLREEDFLE*