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scn_reactorb_scaffold_55290_4

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(2231..2986)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEA9_ALKOO similarity UNIREF
DB: UNIREF100
  • Identity: 52.0
  • Coverage: 254.0
  • Bit_score: 287
  • Evalue 1.30e-74
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.1
  • Coverage: 246.0
  • Bit_score: 290
  • Evalue 1.70e-75
FliA/WhiG family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 52.0
  • Coverage: 254.0
  • Bit_score: 287
  • Evalue 3.70e-75

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Taxonomy

Clostridium aceticum → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 756
ATGATGATAAATACTATACAGGCAATAAAAAATTCTGAGCTTTTTTTGGAATATAACAAATCAAAAGATATTGAAGTAAGAAATAAGATTTTTGCTAAATATCAATATCTTGCTGAAATTATATCAAAAAAATATATGAATAAGGGAATAGAATATGATGATATTTACCAAATAGCAAGTATAGGACTCATATATGCAATAGAAAGATATGACATAAATAAAGGTTATGAGTTCACGAGCTTTGCTACGCCTACAATTCTAGGAGAGGTCAAAAAATACTTTAGAGATAAAGGTTGGGCTATAAAAATTCCTAGGCGAATACAAGAAGTCTCTAAAAGAATAAACGAGACGAGCAATGATTTGCAGTATAAGCTTGGAAGAACACCAAACGTAAAGGAACTGTCAGAAAACCTTGGGTATTCAGAGGAAGAAGTTCTAGAAGCTATGGAAGCGAGCAAGATGTTTGTATCTCAATCATTAAATGTAAGCATTGAAAGAAGTAAGGATTTTAAAGAGGTTGAGCTGGCAGAAATCATAAGGGATGAAGTAAACAACTATGAGATTTTTGAGAACAATGACTTTTTAAAAAGATCTTTTGAGTTTTTAAATAAGGTAGAAAAACAAATAATAATTGACAGATTTTATAACAATTGTACCCAATTAGACATAGCAAAGAAATTAAACATATCTCAAATGACAGTATCAAGAATTGAGAAAAAAGCCTTAGAAAAAATTAGGACTTTTGTGGACAAGTAG
PROTEIN sequence
Length: 252
MMINTIQAIKNSELFLEYNKSKDIEVRNKIFAKYQYLAEIISKKYMNKGIEYDDIYQIASIGLIYAIERYDINKGYEFTSFATPTILGEVKKYFRDKGWAIKIPRRIQEVSKRINETSNDLQYKLGRTPNVKELSENLGYSEEEVLEAMEASKMFVSQSLNVSIERSKDFKEVELAEIIRDEVNNYEIFENNDFLKRSFEFLNKVEKQIIIDRFYNNCTQLDIAKKLNISQMTVSRIEKKALEKIRTFVDK*