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2019_SCN_bioreactor_t1_biofilm_scaffold_185890

Search features with annotation key words

Displaying items 1-30 of 534 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_1
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2837)
DNA (2835bp) protein (945aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZX4_9GAMM
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:EED39131.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
outer membrane autotransporter barrel domain-containing protein
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_2
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2999..3838)
DNA (840bp) protein (280aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UGY3_9DELT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EPR33094.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
transcriptional regulator
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_3
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

4003..5004
DNA (1002bp) protein (334aa)
glycerate dehydrogenase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000289A7C1
oxidoreductase
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_4
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5051..5545)
DNA (495bp) protein (165aa)
CheW protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR57_OPITP
CheW protein
CheW protein {ECO:0000313|EMBL:ACB73724.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5587..7812
DNA (2226bp) protein (742aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
CheA signal transduction histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR56_OPITP
CheA signal transduction histidine kinase
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

7809..8708
DNA (900bp) protein (300aa)
Putative signal transduction protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR55_OPITP
signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:ACB73722.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_7

Not on your lists

comp(8751..9389)
DNA (639bp) protein (213aa)
Antioxidant, AhpC/TSA family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKK7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN23515.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
redoxin domain-containing protein
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_8
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(9455..13375)
DNA (3921bp) protein (1307aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Phosphoribosylformylglycinamidine synthase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B168_9BACT
phosphoribosylformylglycinamidine synthase
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13553..14440)
DNA (888bp) protein (296aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71075.1}; Flags: Fragment;; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_10
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

14634..15269
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IK12_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF93074.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_11
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

15298..16050
DNA (753bp) protein (251aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQS4_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_12
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

16056..16991
DNA (936bp) protein (312aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQS3_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_13
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

17004..17390
DNA (387bp) protein (129aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1INT6_9BACT
iron-sulfur binding protein
Iron-sulfur binding protein {ECO:0000313|EMBL:AHF93466.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_14
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

17484..18137
DNA (654bp) protein (218aa)
Translation initiation factor IF-3 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQS1_OPITP
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

18147..19193
DNA (1047bp) protein (349aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ACB73877.1}; EC=3.5.1.28 {ECO:0000313|EMBL:ACB73877.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSM0_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

19190..20248
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQR9_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77820.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

20334..21218
DNA (885bp) protein (295aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
ATP phosphoribosyltransferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX85_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_18
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

21222..22169
DNA (948bp) protein (316aa)
N-carbamoylputrescine amidase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IN40_9BACT
apolipoprotein acyltransferase
Apolipoprotein acyltransferase {ECO:0000313|EMBL:AHF93009.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_19
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

22301..23305
DNA (1005bp) protein (335aa)
Agmatine deiminase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IN41_9BACT
Agmatine deiminase {ECO:0000313|EMBL:AHF93010.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
agmatine deiminase
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_20
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

23308..23799
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX88_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76140.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_21
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists


24055..25719
DNA (1665bp) protein (555aa)
30S ribosomal protein S1 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX89_OPITP
30S ribosomal protein S1
Ribosomal protein S1 {ECO:0000313|EMBL:ACB76141.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_22
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26079..26630
DNA (552bp) protein (184aa)
General stress protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P5G5_9DELT
General stress protein {ECO:0000313|EMBL:EPX57462.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
putative general stress protein 26
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26730..27680
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQW6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57743.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(27806..28123)
DNA (318bp) protein (106aa)
RNP-1 like RNA-binding protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWV3_OPITP
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:ACB74232.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(28452..28868)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A078_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77414.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_26
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists


29717..30619
DNA (903bp) protein (301aa)
30S ribosomal protein S2 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=RS2_OPITP
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_27
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

30667..31236
DNA (570bp) protein (190aa)
Elongation factor Ts n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ52_OPITP
translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_28
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

31295..31702
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ53_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77774.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_29
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

31944..33347
DNA (1404bp) protein (468aa)
Phage integrase family protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AWW9_9BACT
Phage integrase family protein {ECO:0000313|EMBL:EIP99510.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
integrase
2019_SCN_bioreactor_t1_biofilm_scaffold_185890_30
unknown

Not on your lists

34219..36441
DNA (2223bp) protein (741aa)

This feature has no annotations

Displaying items 1-30 of 534 in total

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