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2019_SCN_bioreactor_t1_biofilm_scaffold_9699

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_1
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

1..300
DNA (300bp) protein (100aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVS0_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83379.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(559..2538)
DNA (1980bp) protein (660aa)
Histidine kinase-like ATPase id=2129252 bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
two-component system sensor histidine kinase/response regulator, hybrid
Two-component system sensor histidine kinase/response regulator, hybrid ('one co) {ECO:0000313|EMBL:CBH23034.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_3
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2995..12111
DNA (9117bp) protein (3039aa)
hypothetical protein n=3 Tax=Xanthobacteraceae RepID=UPI0003806DF2
Autotransporter-associated beta strand repeat family protein {ECO:0000313|EMBL:KGC07078.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
hypothetical protein
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_4
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12372..12881
DNA (510bp) protein (170aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JJN4_9BACT
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ELR68458.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
RNA polymerase sigma-24 factor
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_5
unknown

Not on your lists

12871..13479
DNA (609bp) protein (203aa)

This feature has no annotations

2019_SCN_bioreactor_t1_biofilm_scaffold_9699_6
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

13893..14681
DNA (789bp) protein (263aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AQQ8_9BACT
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIP97349.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
LuxR family transcriptional regulator
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_7
unknown

Not on your lists

14799..15917
DNA (1119bp) protein (373aa)

This feature has no annotations

2019_SCN_bioreactor_t1_biofilm_scaffold_9699_8
unknown

Not on your lists

15963..16631
DNA (669bp) protein (223aa)

This feature has no annotations

2019_SCN_bioreactor_t1_biofilm_scaffold_9699_9
Prevotella sp. CAG:474, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16748..18253)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:474 RepID=R6W335_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD01119.1}; TaxID=1262926 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:474.;"
glycoside hydrolase family 29 (alpha-L-fucosidase)
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18330..19229)
DNA (900bp) protein (300aa)
DNA-formamidopyrimidine glycosylase (EC:3.2.2.23)
DNA-formamidopyrimidine glycosylase {ECO:0000313|EMBL:ACB74913.1}; EC=3.2.2.23 {ECO:0000313|EMBL:ACB74913.1};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
DNA-formamidopyrimidine glycosylase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUM9_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_11
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

19321..20382
DNA (1062bp) protein (354aa)
WD-40 repeat protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVR1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83244.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_12
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20447..21730
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YWY8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC22964.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hypothetical protein
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(21798..22835)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVR0_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74996.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_14
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(22979..24151)
DNA (1173bp) protein (391aa)
CobW/P47K family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RP60_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83246.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

24198..25013
DNA (816bp) protein (272aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVQ9_OPITP
molybdenum ABC transporter periplasmic molybdate-binding protein
Molybdenum ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:ACB74995.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25063..29292)
DNA (4230bp) protein (1410aa)
ATP-dependent helicase HrpA n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1INE8_9BACT
ATP-dependent helicase HrpA
ATP-dependent helicase HrpA {ECO:0000313|EMBL:ACB73301.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

29533..30051
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWH6_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB73300.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

30124..30669
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SZY1_CAUSK
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_19
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(30792..32249)
DNA (1458bp) protein (486aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000255|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000255|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00121};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=GATB_OPITP
glutamyl-tRNA(Gln) amidotransferase subunit B
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_20
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(32332..33795)
DNA (1464bp) protein (488aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQN3_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_21
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(33799..34089)
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000255|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000255|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00122};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=GATC_OPITP
glutamyl-tRNA(Gln) amidotransferase subunit C
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_22
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(34180..36639)
DNA (2460bp) protein (820aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQN1_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_23
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists


comp(36727..37770)
DNA (1044bp) protein (348aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM9_OPITP
phenylalanyl-tRNA synthetase subunit alpha
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists


comp(37945..38328)
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=RL20_OPITP
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists


comp(38419..38613)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM7_OPITP
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_26
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(38675..39544)
DNA (870bp) protein (290aa)
Aminotransferase class IV n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM5_OPITP
class IV aminotransferase
Aminotransferase class IV {ECO:0000313|EMBL:ACB75634.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_27
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(39541..41073)
DNA (1533bp) protein (511aa)
Chorismate binding-like protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM4_OPITP
chorismate binding-like protein
Chorismate binding-like protein {ECO:0000313|EMBL:ACB75633.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_28
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

41225..42151
DNA (927bp) protein (309aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase {ECO:0000313|EMBL:ACB75632.1}; EC=2.5.1.15 {ECO:0000313|EMBL:ACB75632.1};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Dihydropteroate synthase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM3_OPITP
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_29
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

42160..42534
DNA (375bp) protein (125aa)
Dihydroneopterin aldolase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM2_OPITP
dihydroneopterin aldolase
Dihydroneopterin aldolase {ECO:0000313|EMBL:ACB75631.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2019_SCN_bioreactor_t1_biofilm_scaffold_9699_30
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

42638..43144
DNA (507bp) protein (169aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:ACB75630.1}; EC=2.7.6.3 {ECO:0000313|EMBL:ACB75630.1};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQM1_OPITP
Displaying items 1-30 of 115 in total

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