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2019_SCN_bioreactor_t2_biofilm_scaffold_83240

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Displaying items 1-30 of 310 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_1
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

546..1733
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZEW8_9PROT
3-ketoacyl-CoA thiolase Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KIM00439.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1777..2847
DNA (1071bp) protein (357aa)
Secretion protein HlyD family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZY5_OCHA4
Putative HlyD-family secretion protein, yhiI-like protein {ECO:0000313|EMBL:CDX23872.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
efflux transporter, RND family, MFP subunit
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2844..5585
DNA (2742bp) protein (914aa)
ABC transporter permease ATP-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMK8_TISMK
ABC transporter permease ATP-binding protein {ECO:0000313|EMBL:AFK53996.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
yhiH; ABC transporter permease ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5587..6699
DNA (1113bp) protein (371aa)
ABC-2 type transporter n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMK7_TISMK
yhhJ; ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:AFK53995.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7072..8223)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=2 Tax=Methylobacterium RepID=B1Z8G8_METPB
Uncharacterized protein {ECO:0000313|EMBL:KGM33360.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8520..9950
DNA (1431bp) protein (477aa)
Betaine aldehyde dehydrogenase, NAD-dependent n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4X0_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGM35209.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Aldehyde dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9976..10188
DNA (213bp) protein (71aa)
betaine-aldehyde dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D54218
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49290.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
aldehyde dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10593..11156
DNA (564bp) protein (188aa)
betaine-aldehyde dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D54218
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:KJC58215.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
aldehyde dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11184..11693)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NX68_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42479.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11721..12002
DNA (282bp) protein (94aa)
hypothetical protein, partial n=1 Tax=Elioraea tepidiphila RepID=UPI0003691F40
transposase DDE domain protein
Uncharacterized protein {ECO:0000313|EMBL:ABS17174.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11999..15241)
DNA (3243bp) protein (1081aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Error-prone DNA polymerase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IL04_XANP2
DNA polymerase III subunit alpha
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15238..16653)
DNA (1416bp) protein (472aa)
nucleotidyltransferase n=1 Tax=Xanthobacteraceae RepID=UPI0003676345
nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein {ECO:0000313|EMBL:ADH91663.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_13
bacterium YEK0313, Bacteria

Not on your lists

comp(16661..17491)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF7766
Uncharacterized protein {ECO:0000313|EMBL:CEJ14051.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17626..18507)
DNA (882bp) protein (294aa)
Phosphonate ABC transporter, inner membrane subunit n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QDL0_RHOPT
phosphonate ABC transporter inner membrane subunit
Phosphonate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACE99323.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18504..19391)
DNA (888bp) protein (296aa)
Phosphonate uptake transporter n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISN1_RHOP2
Phosphonate ABC transporter permease {ECO:0000313|EMBL:KJC60675.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
phosphonate ABC transporter inner membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19465..20397)
DNA (933bp) protein (311aa)
Putative PhnD protein, phosphonate ABC transporter, exported protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TY28_9BRAD
Phosphonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC46620.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
phosphonates-binding periplasmic protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20453..21271)
DNA (819bp) protein (273aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WBJ7_9BRAD
phoC; phosphonates transport system nucleotide binding/ATPase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_18
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21374..22339)
DNA (966bp) protein (322aa)
Carboxylesterase Est2 family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4E3_9PROT
Carboxylesterase Est2 family protein {ECO:0000313|EMBL:EHL98168.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative acetyl esterase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_19
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22461..24878
DNA (2418bp) protein (806aa)
Acetyltransferase, GNAT family n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCY2_9BURK
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ELX09510.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
putative acetyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_20
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24875..25585
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035CCBBF
tena
Tena {ECO:0000313|EMBL:ACI99015.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_21
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25585..26358
DNA (774bp) protein (258aa)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVG2_GRABC
fumarylacetoacetate hydrolase family protein
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:ABI61190.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26371..27105)
DNA (735bp) protein (245aa)
fliP; flagellar biosynthesis protein FliP (EC:3.1.1.3)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000362741B
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:GAN78260.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27102..27404)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E190BD
Uncharacterized protein {ECO:0000313|EMBL:GAN78261.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27450..27743)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQI1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN78262.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27902..28285
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037F7C78
Flagellar basal-body rod protein FlgB {ECO:0000313|EMBL:GAN78263.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
flagellar basal-body rod protein FlgB
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28312..28719
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036EED44
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
flgC; flagellar basal-body rod protein FlgC
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_27
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28724..29029
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036202E7
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
fliE; flagellar hook-basal body complex protein FliE
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_28
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29084..29356
DNA (273bp) protein (91aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=Q5FQS9_GLUOX
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:GAN55793.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
flagellar biosynthetic protein FliQ
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_29
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29353..30141
DNA (789bp) protein (263aa)
Putative flagellar biosynthetic protein FliR n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RM14_9PROT
Flagellar biosynthetic protein FliR {ECO:0000313|EMBL:GAN55794.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
fliR; flagellar biosynthetic protein FliR
2019_SCN_bioreactor_t2_biofilm_scaffold_83240_30
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30145..31200
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036FBBFE
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:GAN55795.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
flhB; flagellar biosynthesis protein FlhB
Displaying items 1-30 of 310 in total

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