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2019_SCN_bioreactor_t2_biofilm_scaffold_9517

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_1
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..256)
DNA (255bp) protein (85aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Roseomonas sp. B5 RepID=UPI00031C92C1
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_2
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(267..1184)
DNA (918bp) protein (306aa)
ispA; geranyltranstransferase (EC:2.5.1.10)
Geranyltranstransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZJ86_9PROT
Geranyltranstransferase {ECO:0000313|EMBL:EKM99510.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_3
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1188..1457)
DNA (270bp) protein (90aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Exodeoxyribonuclease 7 small subunit n=3 Tax=Acidiphilium RepID=A5FXS9_ACICJ
exodeoxyribonuclease VII small subunit
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1578..2507)
DNA (930bp) protein (310aa)
Histone deacetylase family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKV9_9PROT
Histone deacetylase family {ECO:0000313|EMBL:EFH12054.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2504..2737)
DNA (234bp) protein (78aa)
Hypothetical transcriptional regulatory protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVN6_GRABC
Putative transcriptional regulatory protein
Putative transcriptional regulatory protein {ECO:0000313|EMBL:AHJ61968.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2801..3721
DNA (921bp) protein (307aa)
N-acetylglucosamine kinase {ECO:0000313|EMBL:ABQ30414.1}; EC=2.7.1.59 {ECO:0000313|EMBL:ABQ30414.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
N-acetylglucosamine kinase n=2 Tax=Acidiphilium RepID=A5FXT2_ACICJ
ROK family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3703..4992
DNA (1290bp) protein (430aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKV5_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5201..6220)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036DE753
3-hydroxyisobutyryl-CoA hydrolase/enoyl-CoA hydratase {ECO:0000313|EMBL:GAN77967.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6412..6861)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR40_GRABC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI62712.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_10
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6867..7139)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUV6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHM03233.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_11
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7233..8399
DNA (1167bp) protein (389aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter n=1 Tax=Roseomonas sp. B5 RepID=UPI0003802A78
putative spermidine/putrescine import ATP-binding protein PotA
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_12

Not on your lists

8464..9534
DNA (1071bp) protein (357aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000372AA6A
Uncharacterized protein {ECO:0000313|EMBL:KKN83631.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter substrate-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_13
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9551..10477)
DNA (927bp) protein (309aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Beta-lactamase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A7W7_9PROT
beta-lactamase
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10477..11652)
DNA (1176bp) protein (392aa)
CoA transferase n=1 Tax=Hirschia maritima RepID=UPI00036C0AD6
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:GAN75804.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
CaiB/BaiF family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11656..12576)
DNA (921bp) protein (307aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:ABQ31886.1}; EC=4.1.3.4 {ECO:0000313|EMBL:ABQ31886.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J524_ACIMA
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_16
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12822..14039
DNA (1218bp) protein (406aa)
Putative Multidrug resistance protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SNR3_9BRAD
Putative Multidrug resistance protein {ECO:0000313|EMBL:CCD95840.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
secretion protein HlyD
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14044..17181
DNA (3138bp) protein (1046aa)
RND efflux transporter, HAE1 family, translocase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9U0_HYPSM
Transporter {ECO:0000313|EMBL:ETR78091.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
HAE1 family RND efflux transporter translocase subunit
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17257..19584
DNA (2328bp) protein (776aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000367A9F1
Carbon monoxide dehydrogenase/molybdopterin binding aldehyde oxidase {ECO:0000313|EMBL:GAN75800.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative oxidoreductase
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_19
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19617..20792
DNA (1176bp) protein (392aa)
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:KJJ94966.1}; EC=1.14.13.2 {ECO:0000313|EMBL:KJJ94966.1};; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
pobA; P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3-monooxygenase) (PHBH) (EC:1.14.13.2)
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RVA0_9RALS
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20886..22028)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EA040A
vitamin-B12 independent methionine synthase
Tax=GWC2_Rokubacteria_70_16_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_21
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22164..24749
DNA (2586bp) protein (862aa)
Acriflavin resistance plasma membrane protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQM9_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN76865.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Acriflavin resistance plasma membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_22
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

24746..26902
DNA (2157bp) protein (719aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035E647B
hypothetical protein
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_23
unknown

Not on your lists

comp(27102..27683)
DNA (582bp) protein (194aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_9517_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27731..30574)
DNA (2844bp) protein (948aa)
PII uridylyl-transferase (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=2 Tax=Acidiphilium RepID=A5FX01_ACICJ
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_25
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30589..33240)
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=MUTS_GRABC
DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
DNA mismatch repair protein MutS
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33342..35627
DNA (2286bp) protein (762aa)
tme; malic enzyme (EC:1.1.1.40)
Putative malate dehydrogenase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8K1_9PROT
Malate dehydrogenase {ECO:0000313|EMBL:GAN77733.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_27
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35703..37130)
DNA (1428bp) protein (476aa)
Isocitrate lyase {ECO:0000313|EMBL:BAJ80894.1}; EC=4.1.3.1 {ECO:0000313|EMBL:BAJ80894.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Isocitrate lyase n=2 Tax=Acidiphilium RepID=A5FYM7_ACICJ
isocitrate lyase
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_28
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37268..38671
DNA (1404bp) protein (468aa)
DNA-binding helix-turn-helix protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A552_9PROT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHL97779.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Transcriptional regulator, MerR family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_29
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38744..39637)
DNA (894bp) protein (298aa)
UPI0003CFE79F related cluster n=1 Tax=unknown RepID=UPI0003CFE79F
hypothetical protein
Membrane protein {ECO:0000313|EMBL:ESZ22756.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_9517_30
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39651..40316)
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV48_GRABC
Heme exporter protein B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Displaying items 1-30 of 34 in total

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