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2019_SCN_bioreactor_t2_biofilm_scaffold_165219

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_1
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

485..3469
DNA (2985bp) protein (995aa)
dTDP-rhamnosyl transferase rfbF (EC:2.-.-.-)
dTDP-rhamnosyl transferase rfbF {ECO:0000313|EMBL:ABI61094.1}; EC=2.-.-.- {ECO:0000313|EMBL:ABI61094.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
dTDP-rhamnosyl transferase rfbF n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVQ8_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_2
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3515..4027
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036AFF1F
Putative uncharacterized protein {ECO:0000313|EMBL:EHR01329.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_3
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4104..5429
DNA (1326bp) protein (442aa)
Glycosyl transferase family 14 n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZGQ5_METPB
glycosyl transferase family protein
Glycosyl transferase family 14 {ECO:0000313|EMBL:ACB81288.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_4
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5440..6174)
DNA (735bp) protein (245aa)
Hexapeptide repeat-containing transferase n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RMQ1_ASTEC
Hexapaptide repeat-containing transferase {ECO:0000313|EMBL:BAQ67306.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
hexapeptide repeat-containing transferase
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_5
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6205..7239)
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y086_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY01077.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7286..8161)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000382061C
Uncharacterized protein {ECO:0000313|EMBL:GAN79473.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8194..9882)
DNA (1689bp) protein (563aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFH11712.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFH11712.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Glycosyltransferase, group 2 family protein (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLV3_9PROT
glucosyltransferase MdoH
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_8
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9956..11068
DNA (1113bp) protein (371aa)
Glycosyl transferase group 1 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZDS0_GLUDA
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACI50404.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11105..12073
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036AC3DA
Cobalamin synthesis protein CobW {ECO:0000313|EMBL:GAN77350.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative cobalamin synthesis protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12078..13118
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKK1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH12154.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Vegetatible incompatibility protein HET-E-1
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13280..14122
DNA (843bp) protein (281aa)
Aldo/keto reductase {ECO:0000313|EMBL:EGO95735.1}; EC=1.1.1.274 {ECO:0000313|EMBL:EGO95735.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Aldo/keto reductase n=2 Tax=Acidiphilium RepID=F7S536_9PROT
putative aldo/keto reductase
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_12
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14179..14859
DNA (681bp) protein (227aa)
TonB family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UM45_METS4
TonB family protein
Uncharacterized protein {ECO:0000313|EMBL:KFI29795.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15237..16511)
DNA (1275bp) protein (425aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Transcription termination factor Rho n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BW45_GRABC
Transcription termination factor rho
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16774..17217)
DNA (444bp) protein (148aa)
GCN5-like N-acetyltransferase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X6R7_RHIFR
N-acetyltransferase GCN5
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:AFL51573.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_15
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17217..17669)
DNA (453bp) protein (151aa)
Hypothetical membrane spanning protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPC2_GRABC
hypothetical protein
Hypothetical membrane spanning protein {ECO:0000313|EMBL:ABI63330.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17666..18364)
DNA (699bp) protein (233aa)
Phosphatase/phosphohexomutase family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPC1_GRABC
Hydrolase/phosphatase/phosphohexomutase {ECO:0000313|EMBL:GAN75969.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phosphatase/phosphohexomutase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18414..19487)
DNA (1074bp) protein (358aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Ferrochelatase (EC:4.99.1.1)
Ferrochelatase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPC0_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_18
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19519..20541)
DNA (1023bp) protein (341aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|SAAS:SAAS00078187}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|SAAS:SAAS00078176};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKI2_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20850..21743
DNA (894bp) protein (298aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=PDRP_GRABC
ATP/GTP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_20
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21740..22354
DNA (615bp) protein (205aa)
Maf-like protein maf n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKI0_9PROT
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
septum formation inhibitor protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_21
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22493..23248)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037E0F96
MOSC domain protein {ECO:0000313|EMBL:EFH12592.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
MOSC domain-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_22
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23441..26026
DNA (2586bp) protein (862aa)
Chaperone protein ClpB n=2 Tax=Acidiphilium RepID=F0J051_ACIMA
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
clpB; chaperone protein ClpB
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_23
unknown

Not on your lists

26117..26710
DNA (594bp) protein (198aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_165219_24
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(26842..27849)
DNA (1008bp) protein (336aa)
Zinc-binding alcohol dehydrogenase family protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NTH2_GRAMM
zinc-binding alcohol dehydrogenase family protein
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:AEU35204.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27890..28588)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003625CF8
Uncharacterized protein {ECO:0000313|EMBL:GAN77909.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(28657..30099)
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003717106
GntR family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30177..30782
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030FDF72
paiB; hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_28
Komagataeibacter europaeus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30871..31074)
DNA (204bp) protein (68aa)
30S ribosomal protein S21 n=3 Tax=Gluconacetobacter RepID=RS21_GLUDA
30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1234669 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter europaeus NBRC 3261.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_29
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31299..31850
DNA (552bp) protein (184aa)
Peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F06DFA
2019_SCN_bioreactor_t2_biofilm_scaffold_165219_30
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31847..32464
DNA (618bp) protein (206aa)
RpsU-divergently transcribed protein n=1 Tax=Acidiphilium sp. PM RepID=F7S254_9PROT
putative ubiquinone biosynthesis protein
RpsU-divergently transcribed protein {ECO:0000313|EMBL:EGO96777.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Displaying items 1-30 of 42 in total

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