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2019_SCN_bioreactor_t2_biofilm_scaffold_97989

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_1
unknown

Not on your lists

comp(2..85)
DNA (84bp) protein (28aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_2
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(434..2107)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TD44_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT06022.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2113..4545)
DNA (2433bp) protein (811aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MHB2_RHIL3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK07653.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_4
unknown

Not on your lists

5597..6955
DNA (1359bp) protein (453aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_5
unknown

Not on your lists

7252..8178
DNA (927bp) protein (309aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_6
unknown

Not on your lists

8789..9577
DNA (789bp) protein (263aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_7
Komagataeibacter rhaeticus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9876..10994
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A8A9_PELCD
Uncharacterized protein {ECO:0000313|EMBL:KDU95137.1}; TaxID=1432055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter rhaeticus AF1.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10991..11713
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:CEL28336.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_9
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12209..13123
DNA (915bp) protein (305aa)
High-affinity branched-chain amino acid ABC transporter, permease protein LivH n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A126_9PROT
High-affinity branched-chain amino acid ABC transporter, permease protein LivH {ECO:0000313|EMBL:EHM00689.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
high-affinity branched-chain amino acid transport system permease protein LivH
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_10
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13120..14382
DNA (1263bp) protein (421aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A125_9PROT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EHM00688.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
high-affinity branched-chain amino acid ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_11
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14382..15212
DNA (831bp) protein (277aa)
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A124_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHM00687.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
ABC transporter-like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15209..15928
DNA (720bp) protein (240aa)
ABC transporter n=1 Tax=Oceanibaculum indicum P24 RepID=K2IX13_9PROT
ABC transporter {ECO:0000313|EMBL:EKE67433.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
amino acid ABC transporter ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_13
unknown

Not on your lists

16024..16551
DNA (528bp) protein (176aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_14
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16645..17790
DNA (1146bp) protein (382aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035C641D
NemA protein {ECO:0000313|EMBL:BAQ47708.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
NADH:flavin oxidoreductase
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_15
Paracoccus pantotrophus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17939..19072
DNA (1134bp) protein (378aa)
Probable alcohol dehydrogenase class III n=1 Tax=Paracoccus pantotrophus RepID=Q3S8D7_PARPN
Probable alcohol dehydrogenase class III {ECO:0000313|EMBL:AAZ93608.1}; TaxID=82367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus pantotrophus (Thiosphaera pantotropha).;"
alcohol dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19172..19537)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRG9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM26561.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_17
unknown

Not on your lists

comp(19658..19915)
DNA (258bp) protein (86aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_97989_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20036..20911)
DNA (876bp) protein (292aa)
phosphoserine phosphatase SerB (EC:3.1.3.3)
Phosphoserine phosphatase {ECO:0000313|EMBL:ABQ32025.1}; EC=3.1.3.3 {ECO:0000313|EMBL:ABQ32025.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Phosphoserine phosphatase n=3 Tax=Acidiphilium RepID=A5G2E3_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20957..21910
DNA (954bp) protein (318aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
TRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIU0_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21947..23785
DNA (1839bp) protein (613aa)
Acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIU1_9PROT
Acetolactate synthase large subunit {ECO:0000313|EMBL:GAN76519.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_21
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23831..24349
DNA (519bp) protein (173aa)
acetolactate synthase small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIU2_9PROT
Acetolactate synthase 3 regulatory subunit/large subunit {ECO:0000313|EMBL:GAN76520.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24540..25559
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; Ketol-acid reductoisomerase; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
ketol-acid reductoisomerase n=1 Tax=Elioraea tepidiphila RepID=UPI0003655240
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25726..26763
DNA (1038bp) protein (346aa)
sterol desaturase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036047A0
Uncharacterized protein {ECO:0000313|EMBL:KEC71363.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
fatty acid hydroxylase
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26794..27987)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037E4E0A
Dehydrogenase {ECO:0000313|EMBL:GAN76717.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28109..29683
DNA (1575bp) protein (525aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=3 Tax=Acidiphilium RepID=A5FVX6_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_26
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29799..30842
DNA (1044bp) protein (348aa)
Rod shape-determining protein mreB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS34_GRABC
Rod shape-determining protein mreB
Rod shape-determining protein mreB {ECO:0000313|EMBL:AHJ63362.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_27
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30940..31803
DNA (864bp) protein (288aa)
Cell shape-determining protein MreC n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS35_GRABC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Rod shape-determining protein mreC
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31828..32406
DNA (579bp) protein (193aa)
Rod shape-determining protein mreD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS36_GRABC
Rod shape-determining protein MreD {ECO:0000313|EMBL:GAN77182.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Rod shape-determining protein mreD
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32399..34258
DNA (1860bp) protein (620aa)
Cell elongation specific D,D-transpeptidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS37_GRABC
Cell division/elongation transpeptidase FtsI/penicillin-binding protein {ECO:0000313|EMBL:GAN77183.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cell elongation specific D,D-transpeptidase
2019_SCN_bioreactor_t2_biofilm_scaffold_97989_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34272..35423
DNA (1152bp) protein (384aa)
Rod shape-determining protein RodA n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A147_9PROT
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAN77184.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Rod shape-determining protein rodA
Displaying items 1-30 of 119 in total

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