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2019_SCN_bioreactor_t2_biofilm_scaffold_144527

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1674)
DNA (1674bp) protein (558aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Acidiphilium RepID=A5FZK3_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2063..2992
DNA (930bp) protein (310aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Acidiphilium RepID=A5FZK2_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_3
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3009..4181
DNA (1173bp) protein (391aa)
Molybdenum cofactor biosynthesis protein A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPE8_GRABC
Molybdenum cofactor biosynthesis protein A
Molybdenum cofactor biosynthesis protein A {ECO:0000313|EMBL:AHJ64323.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4320..5480
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031ABD8C
Benzoate transporter {ECO:0000313|EMBL:EYR79009.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
benzoate transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_5
bacterium YEK0313, Bacteria

Not on your lists

comp(5499..7073)
DNA (1575bp) protein (525aa)
Extracellular solute-binding protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XW43_9RHIZ
Glutathione-binding protein GsiB {ECO:0000313|EMBL:CEJ14146.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Putative extracellular solute-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_6
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7223..9835
DNA (2613bp) protein (871aa)
mgtB; Mg2+-importing ATPase (EC:3.6.3.2)
Mg2+-importing ATPase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6W2_AZOS1
Metal ABC transporter ATPase {ECO:0000313|EMBL:KJR63956.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9835..10941
DNA (1107bp) protein (369aa)
FAD-dependent oxidoreductase n=1 Tax=Roseomonas sp. B5 RepID=UPI00036B858E
NAD binding site:FAD dependent oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_8
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11029..12513
DNA (1485bp) protein (495aa)
Apolipoprotein N-acyltransferase (EC:2.3.1.-)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Apolipoprotein N-acyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV62_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12663..13163
DNA (501bp) protein (167aa)
Cro/Cl family transcriptional regulator n=1 Tax=Elioraea tepidiphila RepID=UPI000380109F
Transcriptional regulator XRE {ECO:0000313|EMBL:GAN77061.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
XRE family transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13123..15168)
DNA (2046bp) protein (682aa)
Diguanylate cyclase (GGDEF) domain protein (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMW0_9PROT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFH11361.1}; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
sensory box/GGDEF family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15361..15888)
DNA (528bp) protein (176aa)
Integral membrane protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPC5_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77060.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Integral membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_12
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15942..16697
DNA (756bp) protein (252aa)
Endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Endonuclease III n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPC6_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16780..18000
DNA (1221bp) protein (407aa)
OpgC protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PH72_9RHOB
OpgC protein {ECO:0000313|EMBL:EJW10657.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
acyltransferase 3
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17997..18719
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQS1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29820.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18726..19577)
DNA (852bp) protein (284aa)
Hopanoid biosynthesis associated protein HpnK n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHJ5_GLUDA
Sugar phosphotransferase {ECO:0000313|EMBL:GAN76540.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hopanoid biosynthesis associated protein HpnK
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_16
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19577..20713)
DNA (1137bp) protein (379aa)
Ceramide glucosyltransferase (EC:2.4.1.80)
Ceramide glucosyltransferase {ECO:0000313|EMBL:ABI63300.1}; EC=2.4.1.80 {ECO:0000313|EMBL:ABI63300.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Ceramide glucosyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) PF2_GRABC">RepID=Q0BPF2_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20725..21339)
DNA (615bp) protein (205aa)
Toluene transport system Ttg2D protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) PF1_GRABC">RepID=Q0BPF1_GRABC
ABC transporter toluene transporter auxiliary component Ttg1D/Ttg2D {ECO:0000313|EMBL:GAN77835.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Toluene transport system Ttg2D protein
2019_SCN_bioreactor_t2_biofilm_scaffold_144527_18
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21336..21569)
DNA (234bp) protein (78aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AP34_AZOBR
dxs2; 1-deoxy-D-xylulose 5-phosphate synthase
Displaying 18 items

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