ggKbase home page

2019_SCN_bioreactor_t2_biofilm_scaffold_86693

Search features with annotation key words

Displaying items 1-30 of 215 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_1
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..326
DNA (324bp) protein (108aa)
Putative transposase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HRK1_GLUDA
transposase
Putative transposase {ECO:0000313|EMBL:CAP56929.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_2
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

326..862
DNA (537bp) protein (179aa)
Putative transposase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HCC2_GLUDA
transposase
Putative transposase {ECO:0000313|EMBL:CAP54927.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(999..1874)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003099B73
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1882..2946)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003133632
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC54142.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
extracellular solute-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2970..4079)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FA9D27
ABC transporter-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4076..4921)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030CA15B
Putative ABC transporter (Permease protein) {ECO:0000313|EMBL:KFC73261.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5028..6296)
DNA (1269bp) protein (423aa)
Amidohydrolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP23_9PROT
Amidohydrolase {ECO:0000313|EMBL:EDP65106.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
amidohydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6340..7566)
DNA (1227bp) protein (409aa)
Amidohydrolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP25_9PROT
Amidohydrolase {ECO:0000313|EMBL:EDP65107.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
amidohydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7770..8828
DNA (1059bp) protein (353aa)
Putative GTPase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP16_9PROT
Putative GTPase {ECO:0000313|EMBL:EDP65101.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
cobalamin synthesis protein P47K
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_10
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8917..9303
DNA (387bp) protein (129aa)
Hydrolase {ECO:0000313|EMBL:KDR41750.1}; N-carbamoylsarcosine amidase {ECO:0000313|EMBL:CDY78098.1}; EC=3.5.1.59 {ECO:0000313|EMBL:CDY78098.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037E54F8
isochorismatase hydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_11
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9448..10152
DNA (705bp) protein (235aa)
AsnC family transcriptional regulator n=1 Tax=Sinorhizobium medicae RepID=UPI00036D3EC0
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABR62686.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_12
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10257..11219
DNA (963bp) protein (321aa)
dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase {ECO:0000313|EMBL:ABL72927.1}; EC=4.3.3.7 {ECO:0000313|EMBL:ABL72927.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
dihydrodipicolinate synthetase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F771
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11461..12705
DNA (1245bp) protein (415aa)
D-amino acid dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI0002EA9C60
D-amino-acid dehydrogenase, FAD dependent
D-amino-acid dehydrogenase, FAD dependent {ECO:0000313|EMBL:AHK46231.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12720..13721
DNA (1002bp) protein (334aa)
hydroxyproline-2-epimerase n=1 Tax=Sinorhizobium medicae RepID=UPI00036F56E3
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:KDP73256.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hydroxyproline-2-epimerase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_15

Not on your lists

comp(13989..14516)
DNA (528bp) protein (176aa)
Cytochrome c family protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZCR8_9ZZZZ
Cytochrome c family protein {ECO:0000313|EMBL:EQD45951.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cytochrome C class I protein
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14593..15924)
DNA (1332bp) protein (444aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TV71_9PROT
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:CAM74528.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_17
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15917..16882)
DNA (966bp) protein (322aa)
NAD-dependent dehydratase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037D5A68
NAD-dependent dehydratase {ECO:0000313|EMBL:KID07525.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1.;"
NAD-dependent epimerase/dehydratase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16940..18892)
DNA (1953bp) protein (651aa)
Glycosyl transferase-like protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UBT1_RHIRD
Glycosyl transferase-like protein {ECO:0000313|EMBL:EGP56145.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_19
Gluconobacter morbifer, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18994..20370
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000373929A
Lipopolysaccharide N-acetylglucosaminyltransferase II {ECO:0000313|EMBL:EHH68891.1}; TaxID=1088869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter morbifer G707.;"
putative glycosyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_20
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20521..22068
DNA (1548bp) protein (516aa)
Oxidoreductase, FAD-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LL21_RUEPO
oxidoreductase, FAD-binding
Oxidoreductase, FAD-binding protein {ECO:0000313|EMBL:AAV97342.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_21
RLO_PLX_64_10, Bacteria

Not on your lists

22098..25535
DNA (3438bp) protein (1146aa)
Adenylate/guanylate cyclase id=4402100 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate/guanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_22
unknown

Not on your lists

25677..25898
DNA (222bp) protein (74aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_86693_23
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25922..26338
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ER66_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07284.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26529..27737
DNA (1209bp) protein (403aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XTA1_9PROT
limonene 1,2-monooxygenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_25
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27935..28537
DNA (603bp) protein (201aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA14B
Two-component, nitrogen fixation regulatory protein fixJ {ECO:0000313|EMBL:EAS50013.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
two component LuxR family transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_26
unknown

Not on your lists

28715..29077
DNA (363bp) protein (121aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_86693_27
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29317..30228)
DNA (912bp) protein (304aa)
ADP-heptose--LPS heptosyltransferase (EC:2.-.-.-)
Putative lipopolysaccharide heptosyltransferase II n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUM7_9PROT
Putative lipopolysaccharide heptosyltransferase II {ECO:0000313|EMBL:EHM03278.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_28
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30326..32068
DNA (1743bp) protein (581aa)
Putative asparagine synthase (EC:6.3.5.4)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035F8BF0
Asparagine synthetase {ECO:0000313|EMBL:EKV31686.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_29
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32068..33213
DNA (1146bp) protein (382aa)
Transporter, major facilitator family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUG5_9PROT
Transporter, major facilitator family protein {ECO:0000313|EMBL:EHM03349.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
major facilitator superfamily transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_86693_30
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33243..34358
DNA (1116bp) protein (372aa)
Patatin n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVT8_ACICJ
patatin
Alpha-beta hydrolase superfamily {ECO:0000313|EMBL:KDM67546.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Displaying items 1-30 of 215 in total

View Taxonomy