ggKbase home page

2019_SCN_bioreactor_t2_biofilm_scaffold_162720

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2430
DNA (2430bp) protein (810aa)
hypothetical protein, partial n=1 Tax=Roseomonas sp. B5 RepID=UPI00037353CF
chromosome segregation protein SMC
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2469..3188)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003733D63
Uncharacterized protein {ECO:0000313|EMBL:GAN78244.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_3
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3210..3434
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YZU1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00464.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3452..4294)
DNA (843bp) protein (281aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5)
Bifunctional protein FolD {ECO:0000255|HAMAP-Rule:MF_01576}; Includes:; Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576};; Includes:; Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Bifunctional protein FolD n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=FOLD_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4291..4593)
DNA (303bp) protein (101aa)
UPF0235 protein HMPREF9946_01085 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZX17_9PROT
UPF0235 protein HMPREF9946_01085 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Putative cytosolic protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4590..5030)
DNA (441bp) protein (147aa)
Integral membrane protein, YggT family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVH6_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN76116.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Integral membrane protein, yggt family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5354..6841
DNA (1488bp) protein (496aa)
Endopeptidase degP (EC:3.4.21.-)
Endopeptidase degP n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV72_GRABC
Endopeptidase DegP/Do {ECO:0000313|EMBL:GAN76912.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6921..7148)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6L8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHL96985.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_9
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7283..8077)
DNA (795bp) protein (265aa)
hydratase/decarboxylase (EC:4.1.1.77)
Putative hydratase/decarboxylase {ECO:0000313|EMBL:ABQ37474.1}; EC=4.1.1.77 {ECO:0000313|EMBL:ABQ37474.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CB175
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_10
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8074..8787)
DNA (714bp) protein (238aa)
23S rRNA (Guanosine-2'-O-)-methyltransferase n=2 Tax=Acidiphilium RepID=F0J172_ACIMA
RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ABQ29311.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_11
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9951..10154
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003630202
Protein translocase subunit secE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_12
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10166..10696
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQG3_GRABC
Transcription antitermination protein nusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_13
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10733..11761)
DNA (1029bp) protein (343aa)
Lipopolysaccharide biosynthesis protein-like protein n=3 Tax=Acidiphilium RepID=A5FY80_ACICJ
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:GAN81222.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative lipopolysaccharide biosynthesis protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_14
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11776..13590)
DNA (1815bp) protein (605aa)
Methyltransferase type 12 n=2 Tax=Acidiphilium RepID=A5FY79_ACICJ
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABQ30561.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13613..15376)
DNA (1764bp) protein (588aa)
SAM-dependent O-methyltransferase (EC:2.1.1.-)
SAM-dependent O-methyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPY2_GRABC
Methyltransferase {ECO:0000313|EMBL:GAN76061.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15616..16923)
DNA (1308bp) protein (436aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPY3_GRABC
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:GAN76062.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_17
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16999..17427)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=Q5FQB1_GLUOX
flagellar export protein FliJ-like protein
Flagellar export protein FliJ-like protein {ECO:0000313|EMBL:AHK71687.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans DSM 3504.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_18
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17424..18815)
DNA (1392bp) protein (464aa)
ATP synthase n=1 Tax=Acetobacter aceti RepID=UPI000226056B
Secretion system type III flagellum-specific ATPase {ECO:0000313|EMBL:GAN56333.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
fliI; flagellum-specific ATP synthase
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18947..19699
DNA (753bp) protein (251aa)
Response regulator receiver domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSI1_9PROT
Two component transcriptional regulator cell cycle CtrA {ECO:0000313|EMBL:GAN78259.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ctrA; Two-component cell cycle transcriptional regulator ctrA
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_20
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19766..21433)
DNA (1668bp) protein (556aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZL4_ACICJ
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABQ31046.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21696..22694
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036151F1
2,3-dihydroxybiphenyl 1,2-dioxygenase {ECO:0000313|EMBL:ERF86365.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
biphenyl-2,3-diol 1,2-dioxygenase
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_22
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22738..23601)
DNA (864bp) protein (288aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RM42_9PROT
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative flagellar biosynthesis protein FlhG
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_23
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23598..24494)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000307A323
GTP-binding signal recognition particle
GTP-binding signal recognition particle SRP54, G-domain protein {ECO:0000313|EMBL:ABQ30678.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_24
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24494..26572)
DNA (2079bp) protein (693aa)
Flagellar biosynthesis protein FlhA n=2 Tax=Acidiphilium RepID=A5FYJ7_ACICJ
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:GAN58974.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
flhA; flagellar biosynthesis protein FlhA
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_25
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26586..27920)
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000378FB74
Two component, sigma54 specific, transcriptional regulator, Fis family
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:CCG08895.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27931..28257)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037A2367
Flagellar motor switch protein FliN {ECO:0000313|EMBL:GAN78029.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
fliN; flagellar motor switch protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_27
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28288..28968)
DNA (681bp) protein (227aa)
Flagellar assembly protein H n=2 Tax=Rhodospirillum rubrum RepID=G2T9K1_RHORU
fliH; flagellar assembly protein H
Uncharacterized protein {ECO:0000313|EMBL:ABC21347.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28972..29985)
DNA (1014bp) protein (338aa)
flagellar motor switch protein FliG n=1 Tax=Elioraea tepidiphila RepID=UPI00036AE7E4
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
fliG; Flagellar motor switch protein fliG
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_29
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29985..31664)
DNA (1680bp) protein (560aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036D8F8B
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
flagellar MS-ring protein
2019_SCN_bioreactor_t2_biofilm_scaffold_162720_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31977..32774)
DNA (798bp) protein (266aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
NAD(+) kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ0_9PROT
Displaying items 1-30 of 53 in total

View Taxonomy