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2019_SCN_bioreactor_t2_biofilm_scaffold_153885

Search features with annotation key words

Displaying items 1-30 of 484 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_1
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154..1152)
DNA (999bp) protein (333aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH12197.1}; EC=3.6.3.24 {ECO:0000313|EMBL:EFH12197.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKH4_9PROT
oligopeptide/dipeptide ABC transporter ATPase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1149..2180)
DNA (1032bp) protein (344aa)
peptide ABC transporter ATPase (EC:3.6.3.24)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003765FE9
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJB95678.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_3
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2177..3067)
DNA (891bp) protein (297aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKH1_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH12194.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
peptide ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3078..4028)
DNA (951bp) protein (317aa)
Oligopeptide ABC transporter, permease protein AppB n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKH0_9PROT
Peptide ABC transporter permease {ECO:0000313|EMBL:KJB95680.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
oligopeptide ABC transporter membrane spanning protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4102..5790)
DNA (1689bp) protein (563aa)
Oligopeptide ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JL54_AGRRK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM31839.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
oligopeptide ABC transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_6
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6216..7544
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E6739F
D-amino acid oxidase {ECO:0000313|EMBL:KJB95682.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
oxidoreductase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7719..8201)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Paracoccus marcusii RepID=D7PW30_9RHOB
Integrase {ECO:0000313|EMBL:EXL08555.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
integrase catalytic subunit
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_8
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8284..9021
DNA (738bp) protein (246aa)
Dipeptide transport protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUI1_9PROT
Dipeptide transport protein {ECO:0000313|EMBL:EKE78137.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ABC transporter substrate-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_9
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9226..10485)
DNA (1260bp) protein (420aa)
N-carbamoyl-L-amino acid hydrolase (EC:3.5.1.87)
Putative N-carbamyl-L-cysteine amidohydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6A7_9PROT
Putative N-carbamyl-L-cysteine amidohydrolase {ECO:0000313|EMBL:EHL97209.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10570..11004
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037799D4
Uncharacterized protein {ECO:0000313|EMBL:GAN76013.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_11
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11009..11554)
DNA (546bp) protein (182aa)
Hydrolase, NUDIX family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPY9_9PROT
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFH10636.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_12
unknown

Not on your lists

comp(11615..11839)
DNA (225bp) protein (75aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_153885_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11875..13329)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZNA7_9PROT
Glycosyl/arabinosyl/mannosyl transferase {ECO:0000313|EMBL:GAN78034.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_14
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13338..15800)
DNA (2463bp) protein (821aa)
DNA translocase FtsK n=3 Tax=Acidiphilium RepID=A5FVH1_ACICJ
cell division protein FtsK
DNA translocase FtsK {ECO:0000313|EMBL:ABQ29603.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16038..16493)
DNA (456bp) protein (152aa)
Cupin family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHN2_9PROT
Cupin family protein {ECO:0000313|EMBL:EFH13185.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Cupin superfamily protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16503..17105)
DNA (603bp) protein (201aa)
Glutathione S-transferase family protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1G0_ACIMA
Glutathione S-transferase {ECO:0000313|EMBL:GAN77366.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
glutathione S-transferase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17119..17841)
DNA (723bp) protein (241aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A3Q8_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_18
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17944..18654
DNA (711bp) protein (237aa)
Methyltransferase domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHN5_9PROT
Methyltransferase domain protein {ECO:0000313|EMBL:EFH13188.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
type 11 methyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_19
unknown

Not on your lists

comp(18671..19327)
DNA (657bp) protein (219aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_153885_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19483..20175
DNA (693bp) protein (231aa)
Aldolase n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GC23_9RHIZ
aldolase, putative
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..20522
DNA (351bp) protein (117aa)
Putative uncharacterized protein id=3680158 bin=GWA2_Elusimicrobia_69_24 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_22
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20615..22093
DNA (1479bp) protein (493aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFH11507.1}; EC=1.2.1.16 {ECO:0000313|EMBL:EFH11507.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Succinate-semialdehyde dehydrogenase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RME1_9PROT
succinate-semialdehyde dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22258..23697
DNA (1440bp) protein (480aa)
Pyridine nucleotide-disulfide oxidoreductase dimerization region n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YIW2_9PROT
Dihydrolipoamide dehydrogenase/pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:GAN78525.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
pyridine nucleotide-disulfide oxidoreductase dimerisation region
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23879..25258
DNA (1380bp) protein (460aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=3 Tax=Acidiphilium RepID=A5G001_ACICJ
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:GAN77802.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25270..26421
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR16_9PROT
Nicotinic acid phosphoribosyltransferase {ECO:0000313|EMBL:GAN77803.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
nicotinic acid phosphoribosyltransferase-like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_26
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26544..27278)
DNA (735bp) protein (245aa)
Dimethylmenaquinone methyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AN7_MESSB
hypothetical protein
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:ABG65538.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27322..28305)
DNA (984bp) protein (328aa)
Aldo/keto reductase {ECO:0000313|EMBL:KGM34058.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein id=2306537 bin=GWA2_Methylomirabilis_73_35 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aldo/keto reductase
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28428..28664
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CDD15
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH88724.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_29
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28811..29008)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=B2UJ69_RALPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJJ94545.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_153885_30
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29005..30645)
DNA (1641bp) protein (547aa)
3-(3-hydroxy-phenyl)propionate hydroxylase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NXH9_AZOS1
mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase
3-(3-hydroxy-phenyl)propionate hydroxylase {ECO:0000313|EMBL:BAI73108.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Displaying items 1-30 of 484 in total

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