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2019_SCN_bioreactor_t2_biofilm_scaffold_34484

Search features with annotation key words

Displaying items 1-30 of 292 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..729
DNA (729bp) protein (243aa)
translation initiation factor IF-2, partial n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000379A352
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
translation initiation factor IF-2
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_2
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

746..1117
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z3V7_XANCT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
ribosome-binding factor A
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1101..2111
DNA (1011bp) protein (337aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
tRNA pseudouridine synthase B n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UP63_PSEUP
truB; tRNA pseudouridine synthase B
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_4
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2246..2506
DNA (261bp) protein (87aa)
30S ribosomal protein S15 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UP62_PSEUP
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
rpsO; 30S ribosomal protein S15
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_5
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2665..4770
DNA (2106bp) protein (702aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU18_PSEUU
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_6
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4871..5416)
DNA (546bp) protein (182aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G6N7_XANCT
3-hydroxyanthranilate 3,4-dioxygenase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5422..5847)
DNA (426bp) protein (142aa)
2-aminomuconate deaminase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F465
2-aminomuconate deaminase {ECO:0000313|EMBL:EYR69360.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative translation initiation inhibitor, yjgF family
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5844..6509)
DNA (666bp) protein (222aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=2 Tax=Stenotrophomonas maltophilia RepID=B4SPA1_STRM5
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6523..7959)
DNA (1437bp) protein (479aa)
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5595C
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:KGQ20292.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
2-hydroxymuconic semialdehyde dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_10
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7969..8790)
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN46879.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Endonuclease 8 id=2439155 bin=GWF1_Xanthomonadales_69_6 species=Serratia marcescens genus=Serratia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
nei; endonuclease VIII/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8795..9580)
DNA (786bp) protein (262aa)
short-chain dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B759DE
Short-chain dehydrogenase {ECO:0000313|EMBL:EYR69346.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9623..10186)
DNA (564bp) protein (188aa)
phosphoesterase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003061994
Phosphoesterase {ECO:0000313|EMBL:KGM55455.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_13
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..11312)
DNA (1149bp) protein (383aa)
Glycosyl transferase n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB2388 RepID=K8FWB8_9XANT
Glycosyl transferase {ECO:0000313|EMBL:EYR66642.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
glycosyl transferase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..12759)
DNA (1155bp) protein (385aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
homoserine O-acetyltransferase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00037B4B3E
homoserine acetyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_15
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12906..13901)
DNA (996bp) protein (332aa)
C-type cytochrome biogenesis protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWK4_PSEUP
C-type cytochrome biogenesis protein
C-type cytochrome biogenesis protein {ECO:0000313|EMBL:AER56511.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_16
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13901..14533)
DNA (633bp) protein (211aa)
cytochrome C biogenesis protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031F098D
cytochrome C biogenesis protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_17
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14530..15075)
DNA (546bp) protein (182aa)
thiol:disulfide interchange protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F63B46
Thiol:disulfide interchange protein {ECO:0000313|EMBL:EYR69586.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
C-type cytochromebiogenesis protein-thioredoxin
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_18
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15072..17003)
DNA (1932bp) protein (644aa)
cytochrome C biogenesis protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000378A2E5
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KGM57241.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
c-type cytochrome biogenesis membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_19
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17003..17491)
DNA (489bp) protein (163aa)
Cytochrome c-type biogenesis protein CcmE 2 n=4 Tax=Xanthomonas campestris RepID=CCME2_XANC8
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
C-type cytochrome biogenesis protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_20
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17488..17652)
DNA (165bp) protein (55aa)
heme exporter protein CcmD n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DF9354
Heme exporter protein CcmD {ECO:0000313|EMBL:KGO97498.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17649..18404)
DNA (756bp) protein (252aa)
Heme exporter protein CcmC n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSG9_PSEUU
Heme ABC transporter permease {ECO:0000313|EMBL:KGM55695.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
heme exporter protein CcmC
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_22
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18539..19117)
DNA (579bp) protein (193aa)
Azurin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVZ2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM55805.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_23
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19292..19963)
DNA (672bp) protein (224aa)
heme ABC transporter permease n=2 Tax=Xanthomonas RepID=UPI0003827E6B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
ccmB; ABC transporter heme permease CcmB
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_24
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19960..20619)
DNA (660bp) protein (220aa)
Cytochrome c biogenesis protein CcmA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWJ2_PSEUP
cytochrome c biogenesis protein CcmA
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_25
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20734..21894
DNA (1161bp) protein (387aa)
aminotransferase n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039E3131
Aminotransferase {ECO:0000313|EMBL:KGM51724.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
ybdL; aminotransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_26
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21950..23302
DNA (1353bp) protein (451aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11 1.8.4.12); K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] id=12496467 bin=THIO_MID species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
peptide methionine sulfoxide reductase (EC:1.8.4.11 1.8.4.12)
Peptide methionine sulfoxide reductase {ECO:0000313|EMBL:ACX97086.1}; EC=1.8.4.11 {ECO:0000313|EMBL:ACX97086.1};; EC=1.8.4.12 {ECO:0000313|EMBL:ACX97086.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_27
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23389..24204
DNA (816bp) protein (272aa)
Carbon-nitrogen hydrolase family protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZBM5_9XANT
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:KGM55700.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hydrolase, carbon-nitrogen family
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_28
unknown

Not on your lists

24251..24661
DNA (411bp) protein (137aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_34484_29
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24707..27019
DNA (2313bp) protein (771aa)
TonB-denpendent receptor n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B67142
Uncharacterized protein {ECO:0000313|EMBL:KFN42397.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
TonB-dependent receptor protein
2019_SCN_bioreactor_t2_biofilm_scaffold_34484_30
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27137..27637
DNA (501bp) protein (167aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344FF44
thiol peroxidase
Displaying items 1-30 of 292 in total

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