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2019_SCN_bioreactor_t3_biofilm_scaffold_4916

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..338
DNA (336bp) protein (112aa)
phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenate-cysteine ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAT5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54699.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

325..801
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAT6_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(966..1979)
DNA (1014bp) protein (338aa)
FMN-dependent enoyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:GAO54697.1}; EC=1.3.1.9 {ECO:0000313|EMBL:GAO54697.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2-nitropropane dioxygenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C720
2-nitropropane dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2297..3550)
DNA (1254bp) protein (418aa)
Aspartokinase {ECO:0000313|EMBL:GAO54696.1}; EC=2.7.2.4 {ECO:0000313|EMBL:GAO54696.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G334_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3660..4403
DNA (744bp) protein (248aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G335_NOVAD
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4408..4587
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G336_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27737.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4592..4921)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54694.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4973..5386)
DNA (414bp) protein (138aa)
Thioesterase superfamily n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G337_NOVAD
Thioesterase superfamily {ECO:0000313|EMBL:GAO54693.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioesterase superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5440..5976)
DNA (537bp) protein (179aa)
Ribosylnicotinamide kinase {ECO:0000313|EMBL:GAO54692.1}; EC=2.7.1.22 {ECO:0000313|EMBL:GAO54692.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative ATPase/kinase involved in NAD metabolism n=1 Tax=Novosphingobium sp. AP12 RepID=J2PTX8_9SPHN
NAD metabolism ATPase/kinase-like
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5973..6557)
DNA (585bp) protein (195aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCE9_NOVAD
Ribosyl nicotinamide transporter, pnuC-like {ECO:0000313|EMBL:GAO54691.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nicotinamide mononucleotide transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6571..6918)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCF0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54690.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7009..7320)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCF1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54689.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7451..8536
DNA (1086bp) protein (362aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=AROC_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8675..9448)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO54687.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAO54687.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VGT8_RHOPX
enoyl-CoA hydratase/isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9595..10905
DNA (1311bp) protein (437aa)
C4-dicarboxylate ABC transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B784CD
Na+/H+-dicarboxylate symporters {ECO:0000313|EMBL:GAO54685.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sodium:dicarboxylate symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11266..11697)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCF4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54684.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11694..12404)
DNA (711bp) protein (237aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Endonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W9_9SPHN
endonuclease III
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12401..13093)
DNA (693bp) protein (231aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCF7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_19
unknown

Not on your lists

13505..13825
DNA (321bp) protein (107aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_4916_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13902..14600
DNA (699bp) protein (233aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD-dependent protein deacylase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBD4_9SPHN
NAD-dependent deacetylase
2019_SCN_bioreactor_t3_biofilm_scaffold_4916_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14812..15402)
DNA (591bp) protein (197aa)
UBA/THIF-type NAD/FAD binding fold protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCF9_NOVAD
Sulfur carrier protein adenylyltransferase thiF {ECO:0000313|EMBL:GAO54680.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UBA/THIF-type NAD/FAD binding domain-containing protein
Displaying 21 items

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