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2019_SCN_bioreactor_t3_biofilm_scaffold_5800

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..109
DNA (108bp) protein (36aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5T9_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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114..2174
DNA (2061bp) protein (687aa)
heparinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44384
Heparinase II/III-like {ECO:0000313|EMBL:GAO54340.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heparinase II/III-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2326..3675
DNA (1350bp) protein (450aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10)
IMP cyclohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46EE8
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3779..4612
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036AA9CE
TesB-like acyl-CoA thioesterase 4 {ECO:0000313|EMBL:GAO54342.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4694..5350)
DNA (657bp) protein (219aa)
Cell wall hydrolase, SleB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC66_NOVAD
Cell wall hydrolyses {ECO:0000313|EMBL:GAO54343.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cell wall hydrolase, SleB
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5558..5884)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC65_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54344.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5905..6402)
DNA (498bp) protein (166aa)
Phenylacetic acid degradation-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC64_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54345.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phenylacetic acid degradation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6392..6853)
DNA (462bp) protein (154aa)
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC63_NOVAD
PTS system nitrogen-specific IIA component ptsN protein {ECO:0000313|EMBL:GAO54346.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PTS IIA-like nitrogen-regulatory protein PtsN
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6986..7555)
DNA (570bp) protein (190aa)
30S ribosomal protein S30 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B63EE1
Ribosomal subunit interface protein {ECO:0000313|EMBL:GAO54347.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
30S ribosomal protein S30
2019_SCN_bioreactor_t3_biofilm_scaffold_5800_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7594..7998)
DNA (405bp) protein (135aa)
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:GAO54348.1}; EC=2.7.7.7 {ECO:0000313|EMBL:GAO54348.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC61_NOVAD
Displaying 10 items

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