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2019_SCN_bioreactor_t3_biofilm_scaffold_6491

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..640)
DNA (639bp) protein (213aa)
OmpW n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G558_NOVAD
Outer membrane protein W {ECO:0000313|EMBL:GAO56663.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
OmpW
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

877..1266
DNA (390bp) protein (130aa)
Cytochrome c oxidase subunit ccoN {ECO:0000313|EMBL:GAO56662.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAO56662.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase S41 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7493A
peptidase S41
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1297..2538
DNA (1242bp) protein (414aa)
Cytochrome c oxidase subunit ccoN {ECO:0000313|EMBL:GAO56662.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAO56662.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Cytochrome c oxidase, cbb3-type, subunit I n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8A3_9SPHN
cbb3-type cytochrome c oxidase subunit I
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2564..3316
DNA (753bp) protein (251aa)
Cytochrome c oxidase subunit ccoO {ECO:0000313|EMBL:GAO56661.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAO56661.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G560_NOVAD
cbb3-type cytochrome c oxidase subunit II
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3313..3489
DNA (177bp) protein (59aa)
Cytochrome c oxidase subunit ccoQ {ECO:0000313|EMBL:GAO56660.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAO56660.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Cbb3-type cytochrome oxidase component n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G561_NOVAD
Cbb3-type cytochrome oxidase component
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3479..4414
DNA (936bp) protein (312aa)
cytochrome CBB3 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B41937
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c oxidase, cbb3-type subunit III
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4420..5892
DNA (1473bp) protein (491aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G563_NOVAD
Type cbb3 cytochrome oxidase biogenesis protein ccoG {ECO:0000313|EMBL:GAO56658.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4Fe-4S ferredoxin
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5889..6371
DNA (483bp) protein (161aa)
Integral membrane protein linked to a cation pump-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G564_NOVAD
Type cbb3 cytochrome oxidase biogenesis protein ccoH {ECO:0000313|EMBL:GAO56657.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
integral membrane protein linked to a cation pump-like
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8522
DNA (1080bp) protein (360aa)
Heavy metal translocating P-type ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G565_NOVAD
Type cbb3 cytochrome oxidase biogenesis protein ccoI {ECO:0000313|EMBL:GAO56656.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heavy metal translocating P-type ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8519..8668
DNA (150bp) protein (50aa)
Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8B0_9SPHN
Type cbb3 cytochrome oxidase biogenesis protein ccoS {ECO:0000313|EMBL:GAO56655.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome oxidase maturation protein, cbb3-type
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8670..8942
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56654.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8932..10287
DNA (1356bp) protein (452aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Coproporphyrinogen-III oxidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G568_NOVAD
coproporphyrinogen III oxidase
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10271..11518)
DNA (1248bp) protein (416aa)
Diguanylate cyclase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WKV0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56652.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
diguanylate cyclase
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11839..12453
DNA (615bp) protein (205aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14)
2-keto-3-deoxy-phosphogluconate aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G569_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56650.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12775..15132
DNA (2358bp) protein (786aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G570_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15331..16731
DNA (1401bp) protein (467aa)
Soluble pyridine nucleotide transhydrogenase {ECO:0000313|EMBL:GAO56648.1}; EC=1.6.1.1 {ECO:0000313|EMBL:GAO56648.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Soluble pyridine nucleotide transhydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8B5_9SPHN
putative soluble pyridine nucleotide transhydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16741..17859)
DNA (1119bp) protein (373aa)
TrkA-N n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B68ABA
Potassium channel protein {ECO:0000313|EMBL:GAO56647.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TrkA-N
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17939..19195)
DNA (1257bp) protein (419aa)
Putative transmembrane protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G572_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56646.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transmembrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19188..20549)
DNA (1362bp) protein (454aa)
TPR repeat protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G573_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56645.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TPR repeat-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20578..21327)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G574_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56644.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_6491_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21327..21947)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G575_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56643.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 21 items

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