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2019_SCN_bioreactor_t3_biofilm_scaffold_19901

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(366..935)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G720_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56072.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1001..2365)
DNA (1365bp) protein (455aa)
Pyruvate dehydrogenase E1 component beta subunit {ECO:0000313|EMBL:GAO56071.1}; EC=1.2.4.1 {ECO:0000313|EMBL:GAO56071.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyruvate dehydrogenase subunit beta (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA05_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2367..3626)
DNA (1260bp) protein (420aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1)
Pyruvate dehydrogenase (Lipoamide) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G725_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_4
unknown

Not on your lists

3778..3963
DNA (186bp) protein (62aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_19901_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4037..4438)
DNA (402bp) protein (134aa)
Mutator mutT protein, hypothetical n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA07_9SPHN
5-methyl-dCTP pyrophosphohydrolase {ECO:0000313|EMBL:GAO56068.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NUDIX hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4581..4760
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4014A
Uncharacterized protein {ECO:0000313|EMBL:GAO56067.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Flp/Fap pilin component protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4856..5047
DNA (192bp) protein (64aa)
pilin n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B73F67
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:GAO56066.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Flp/Fap pilin component
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5197..6681)
DNA (1485bp) protein (495aa)
Peptidase M48, Ste24p n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G729_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56064.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M48, Ste24p
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6799..7743)
DNA (945bp) protein (315aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B76289
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7776..8648)
DNA (873bp) protein (291aa)
Tyrosine recombinase XerC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA11_9SPHN
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phage integrase
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8677..10602)
DNA (1926bp) protein (642aa)
hypothetical protein, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3EDBF
Uncharacterized protein {ECO:0000313|EMBL:GAO56061.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10797..11378
DNA (582bp) protein (194aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=2 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=AROK_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11390..12499
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G734_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12508..12666)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G735_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56058.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12907..13278)
DNA (372bp) protein (124aa)
Secretion chaperone CsaA protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C995_9SPHN
Protein secretion chaperonin csaA {ECO:0000313|EMBL:GAO56057.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13343..14125)
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO56056.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAO56056.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0003116DBC
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14238..15206)
DNA (969bp) protein (323aa)
Glucokinase {ECO:0000313|EMBL:GAO56055.1}; EC=2.7.1.2 {ECO:0000313|EMBL:GAO56055.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucokinase (EC:2.7.1.2)
Glucokinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G737_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15229..16851)
DNA (1623bp) protein (541aa)
Phosphogluconate dehydratase {ECO:0000313|EMBL:GAO56054.1}; EC=4.2.1.12 {ECO:0000313|EMBL:GAO56054.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphogluconate dehydratase (EC:4.2.1.12)
phosphogluconate dehydratase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B56266
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16851..17492)
DNA (642bp) protein (214aa)
6-phosphogluconolactonase {ECO:0000313|EMBL:GAO56053.1}; EC=3.1.1.31 {ECO:0000313|EMBL:GAO56053.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZA21_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17470..18909)
DNA (1440bp) protein (480aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
glucose-6-phosphate 1-dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B66515
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19018..20655)
DNA (1638bp) protein (546aa)
Maltodextrin glucosidase {ECO:0000313|EMBL:GAO56051.1}; EC=3.2.1.20 {ECO:0000313|EMBL:GAO56051.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alpha amylase, catalytic region n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G742_NOVAD
alpha amylase
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20912..21661
DNA (750bp) protein (250aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3D4F9
DNA-binding response regulator {ECO:0000313|EMBL:GAO56050.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21672..22970
DNA (1299bp) protein (433aa)
two-component sensor histidine kinase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C7B4
Sensor histidine kinase {ECO:0000313|EMBL:GAO56049.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22978..23589)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILD3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56048.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23586..24479)
DNA (894bp) protein (298aa)
GroES-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G759_NOVAD
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO56047.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molecular chaperone GroES
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24495..25259)
DNA (765bp) protein (255aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO56046.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO56046.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G425_NOVAD
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25247..26149)
DNA (903bp) protein (301aa)
beta-lactamase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52FB7
Metallo-beta-lactamase superfamily protein PA0057 {ECO:0000313|EMBL:GAO56045.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26146..26709)
DNA (564bp) protein (188aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C94C
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAO56044.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26868..27938)
DNA (1071bp) protein (357aa)
Vanillate monooxygenase {ECO:0000313|EMBL:GAO56043.1}; EC=1.14.13.82 {ECO:0000313|EMBL:GAO56043.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Rieske (2Fe-2S) protein (EC:1.14.13.82)
Rieske (2Fe-2S) protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G761_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_19901_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28112..28645)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G762_NOVAD
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56042.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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