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2019_SCN_bioreactor_t3_biofilm_scaffold_20329

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..541
DNA (540bp) protein (180aa)
molybdenum cofactor sulfurase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B325DC
Flavodoxin reductases (Ferredoxin-NADPH reductases) family 1 {ECO:0000313|EMBL:GAO54814.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative Fe-S protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(538..954)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G980_NOVAD
Integral membrane protein {ECO:0000313|EMBL:GAO54815.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1098..3863)
DNA (2766bp) protein (922aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G596_NOVAD
TonB-dependent receptor {ECO:0000313|EMBL:GAO54816.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_4
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4290..6017
DNA (1728bp) protein (576aa)
GTP-binding protein TypA n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQR0_SPHAL
GTP-binding protein TypA
GTP-binding protein TypA {ECO:0000313|EMBL:ABF54012.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6104..7351)
DNA (1248bp) protein (416aa)
transglutaminase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA07D
Uncharacterized protein {ECO:0000313|EMBL:GAO54819.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7291..8646)
DNA (1356bp) protein (452aa)
transglutaminase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA07D
Uncharacterized protein {ECO:0000313|EMBL:GAO54819.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8965..9438
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHU1_BEII9
Uncharacterized protein {ECO:0000313|EMBL:GAO54820.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9605..10003
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373B3EB
Uncharacterized protein {ECO:0000313|EMBL:GAO54821.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10079..11272
DNA (1194bp) protein (398aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G593_NOVAD
Glycosyltransferase {ECO:0000313|EMBL:GAO54822.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
group 1 glycosyl transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11355..11990
DNA (636bp) protein (212aa)
Mlr8301 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983J6_RHILO
hypothetical protein
Mlr8301 protein {ECO:0000313|EMBL:BAB53885.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12018..12494)
DNA (477bp) protein (159aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L912_9SPHN
crossover junction endodeoxyribonuclease RuvC
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12496..12846)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W2X0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14668.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12866..13609)
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein Y88_2002 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5L8_9SPHN
Probable transcriptional regulatory protein NMD1_01926 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14149..14526)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B56A6D
Uncharacterized protein {ECO:0000313|EMBL:GAO54826.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14586..16052
DNA (1467bp) protein (489aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB93_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16144..17805
DNA (1662bp) protein (554aa)
UPI0003D6199F related cluster n=1 Tax=unknown RepID=UPI0003D6199F
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:GAO54828.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphate transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17845..18813)
DNA (969bp) protein (323aa)
L-fuco-beta-pyranose dehydrogenase {ECO:0000313|EMBL:GAO54829.1}; EC=1.1.1.122 {ECO:0000313|EMBL:GAO54829.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative oxidoreductase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H878_GLUDA
Short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18949..19545
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZII9_GLUDA
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO54830.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19549..21129)
DNA (1581bp) protein (527aa)
ABC transporter related protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z607_9SPHN
ABC transporter related protein {ECO:0000313|EMBL:EGD59971.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ABC transporter-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20329_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21114..21344)
DNA (231bp) protein (77aa)
Cysteine ABC transporter permease/ATP-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z608_9SPHN
Transport ATP-binding protein cydD {ECO:0000313|EMBL:GAO54832.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteine ABC transporter permease/ATP-binding protein
Displaying 20 items

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