ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_21738

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..422)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y3Q0_9SPHN
Selenoprotein O and cysteine-containing homologs {ECO:0000313|EMBL:GAO53679.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

584..1444
DNA (861bp) protein (287aa)
Alpha/beta hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T7_NOVAD
Hydrolase {ECO:0000313|EMBL:GAO53678.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1441..2592
DNA (1152bp) protein (384aa)
glycosyl transferase family 1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6AF7A
Glycosyltransferase {ECO:0000313|EMBL:GAO53677.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
group 1 glycosyl transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2827..3462
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B509A4
Mlr7403 protein {ECO:0000313|EMBL:GAO53676.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3488..4858
DNA (1371bp) protein (457aa)
pyrrolo-quinoline quinone n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B379F7
Outer membrane protein yfgL, lipoprotein component of the protein assembly complex {ECO:0000313|EMBL:GAO53675.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Pyrrolo-quinoline quinone
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4927..6267
DNA (1341bp) protein (447aa)
protein-S-isoprenylcysteine methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6297B
GTP-binding protein engA {ECO:0000313|EMBL:GAO53674.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
isoprenylcysteine carboxyl methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6332..6631)
DNA (300bp) protein (100aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T0_NOVAD
Mll2956 protein {ECO:0000313|EMBL:GAO53673.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
antibiotic biosynthesis monooxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6650..7654)
DNA (1005bp) protein (335aa)
Glutamate--cysteine ligase {ECO:0000313|EMBL:GAO53672.1}; EC=6.3.2.2 {ECO:0000313|EMBL:GAO53672.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutamate--cysteine ligase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B652A3
glutamate--cysteine ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7962..8711)
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J1P2_9SPHN
16S ribosomal RNA methyltransferase RsmE
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8787..9704
DNA (918bp) protein (306aa)
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:GAO53670.1}; EC=2.5.1.39 {ECO:0000313|EMBL:GAO53670.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ubiA; 4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.-)
Prenyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6Y1_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9695..10072)
DNA (378bp) protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S5_NOVAD
Glyoxalase family protein {ECO:0000313|EMBL:GAO53669.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_21738_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10107..10613
DNA (507bp) protein (169aa)
Transcriptional regulator, MerR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S4_NOVAD
Redox-sensitive transcriptional activator soxR {ECO:0000313|EMBL:GAO53668.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MerR family transcriptional regulator
Displaying 12 items

View Taxonomy