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2019_SCN_bioreactor_t3_biofilm_scaffold_688

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_688_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87..461)
DNA (375bp) protein (125aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA72_NOVAD
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KHS48824.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
glyoxalase/bleomycin resistance protein/dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(490..1818)
DNA (1329bp) protein (443aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA74_NOVAD
Vannilate transporter vanK {ECO:0000313|EMBL:GAO54741.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_688_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1879..2349)
DNA (471bp) protein (157aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA75_NOVAD
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO54742.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_688_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2416..3246
DNA (831bp) protein (277aa)
Carotenoid oxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA76_NOVAD
Lignostilbene-alpha,beta-dioxygenase and related enzymes {ECO:0000313|EMBL:GAO54743.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
carotenoid oxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3240..3869
DNA (630bp) protein (210aa)
Carotenoid oxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA76_NOVAD
Lignostilbene-alpha,beta-dioxygenase and related enzymes {ECO:0000313|EMBL:GAO54743.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
carotenoid oxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3866..4339
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA77_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54744.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_688_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4452..4733)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRR7_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:GAO54745.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_688_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4882..6147)
DNA (1266bp) protein (422aa)
N-succinylarginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074425}; EC=3.5.3.23 {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074418};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
succinylarginine dihydrolase (EC:3.-.-.-)
N-succinylarginine dihydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ASTB_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_688_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6167..7180)
DNA (1014bp) protein (338aa)
Arginine N-succinyltransferase {ECO:0000313|EMBL:GAO54747.1}; EC=2.3.1.109 {ECO:0000313|EMBL:GAO54747.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
arginine succinyltransferase (EC:2.3.1.109)
Arginine succinyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Z5_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_688_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7186..8391)
DNA (1206bp) protein (402aa)
Peptidase dimerization n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Z4_NOVAD
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases {ECO:0000313|EMBL:GAO54748.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_688_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8504..8650)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54749.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_688_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8766..9845)
DNA (1080bp) protein (360aa)
Aminoglycoside phosphotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54751.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminoglycoside phosphotransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9842..10933)
DNA (1092bp) protein (364aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO54752.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO54752.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N3_NOVAD
alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11057..12001)
DNA (945bp) protein (315aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54753.1}; EC=1.3.8.4 {ECO:0000313|EMBL:GAO54753.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N2_NOVAD
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11941..12216)
DNA (276bp) protein (92aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54753.1}; EC=1.3.8.4 {ECO:0000313|EMBL:GAO54753.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBJ5_9SPHN
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_688_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12345..13772)
DNA (1428bp) protein (476aa)
Na+/melibiose symporter and related transporters-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N1_NOVAD
Sugar transporter {ECO:0000313|EMBL:GAO54754.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Na+/melibiose symporter and related transporters-like
2019_SCN_bioreactor_t3_biofilm_scaffold_688_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13769..14617)
DNA (849bp) protein (283aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO54755.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO54755.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N0_NOVAD
short-chain dehydrogenase/reductase SDR
Displaying 17 items

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