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2019_SCN_bioreactor_t3_biofilm_scaffold_127824

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..280)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Z0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54244.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

436..1569
DNA (1134bp) protein (378aa)
Beta-lactamase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Y9_NOVAD
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:GAO54245.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1562..2554)
DNA (993bp) protein (331aa)
Cation diffusion facilitator family transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Y7_NOVAD
Cobalt-zinc-cadmium resistance protein czcD {ECO:0000313|EMBL:GAO54246.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cation diffusion facilitator family transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2565..3176)
DNA (612bp) protein (204aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PDXH_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3642..4604
DNA (963bp) protein (321aa)
Heat shock protein DnaJ-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC5_NOVAD
DnaJ-class molecular chaperone cbpA {ECO:0000313|EMBL:GAO54248.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molecular chaperone DnaJ
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4611..5345
DNA (735bp) protein (245aa)
Ribonuclease BN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC4_NOVAD
Ribonuclease BN {ECO:0000313|EMBL:GAO54249.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribonuclease BN
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5342..5698
DNA (357bp) protein (119aa)
Ribonuclease BN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC4_NOVAD
Ribonuclease BN {ECO:0000313|EMBL:GAO54249.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribonuclease BN
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5695..6498
DNA (804bp) protein (268aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
enoyl-[acyl-carrier-protein] reductase [NADH] (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC3_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..7131)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44152
Uncharacterized protein {ECO:0000313|EMBL:GAO54251.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7244..7756)
DNA (513bp) protein (171aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ubiquinone biosynthesis protein COQ7 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC1_NOVAD
ubiquinone biosynthesis protein COQ7
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7753..8250)
DNA (498bp) protein (166aa)
Disulfide bond formation protein DsbB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC0_NOVAD
Periplasmic thiol:disulfide oxidoreductase dsbB {ECO:0000313|EMBL:GAO54253.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
disulfide bond formation protein DsbB
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8255..9640)
DNA (1386bp) protein (462aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:GAO54254.1}; EC=3.4.21.102 {ECO:0000313|EMBL:GAO54254.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
C-terminal processing peptidase-3 (EC:3.4.21.102)
C-terminal processing peptidase-3, Serine peptidase, MEROPS family S41A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCB9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9711..10853)
DNA (1143bp) protein (381aa)
Peptidase M23B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCB8_NOVAD
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:GAO54255.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M23B
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10864..11289)
DNA (426bp) protein (142aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RLMH_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11339..11746)
DNA (408bp) protein (136aa)
ribosome-associated protein IOJAP n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B60AC4
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Iojap-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11877..12581)
DNA (705bp) protein (235aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000313|EMBL:GAO54258.1}; EC=2.7.7.18 {ECO:0000313|EMBL:GAO54258.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCB5_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_127824_17
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12698..13021
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003478E8A
Uncharacterized protein {ECO:0000313|EMBL:GAD33967.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
Displaying 17 items

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