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2019_SCN_bioreactor_t3_biofilm_scaffold_79289

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..616)
DNA (615bp) protein (205aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO55045.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO55045.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative oxidoreductase (EC:1.-.-.-)
Dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBP8_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

729..1619
DNA (891bp) protein (297aa)
Putative transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBP7_9SPHN
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO55044.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1807..4206)
DNA (2400bp) protein (800aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5F7
TonB-dependent receptor {ECO:0000313|EMBL:GAO55015.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5028..5555)
DNA (528bp) protein (176aa)
RNA polymerase sigma-70 factor n=1 Tax=Sphingomonas elodea RepID=UPI00026321A1
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:GAO55013.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RNA polymerase sigma-70 factor
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5582..6409)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036034A4
Uncharacterized protein {ECO:0000313|EMBL:GAO55012.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..7283)
DNA (882bp) protein (294aa)
glycosyl transferase family 2 n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDE00
Polysaccharide deacetylase {ECO:0000313|EMBL:GAO55011.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyl transferase family 2
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7423..8307)
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:GAO55010.1}; EC=2.7.7.9 {ECO:0000313|EMBL:GAO55010.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UDP-glucose pyrophosphorylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB75_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8707..9588)
DNA (882bp) protein (294aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
succinyl-CoA synthetase (ADP-forming) subunit alpha (EC:6.2.1.5)
succinyl-CoA synthetase subsunit alpha n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6D05B
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9592..9897)
DNA (306bp) protein (102aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N773_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10958..11890)
DNA (933bp) protein (311aa)
Electron transfer flavoprotein, alpha subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3H0_NOVAD
Electron transfer flavoprotein, alpha subunit {ECO:0000313|EMBL:GAO55006.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
electron transfer flavoprotein subunit alpha
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11892..12638)
DNA (747bp) protein (249aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3G9_NOVAD
Electron transfer flavoprotein, beta subunit {ECO:0000313|EMBL:GAO54152.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
electron transfer flavoprotein subunit beta
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12687..15815)
DNA (3129bp) protein (1043aa)
Propionyl-CoA carboxylase biotin-containing subunit {ECO:0000313|EMBL:GAO55004.1}; EC=6.4.1.3 {ECO:0000313|EMBL:GAO55004.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Biotin carboxyl carrier protein / biotin carboxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA63_NOVAD
carbamoyl-phosphate synthase L chain, ATP-binding
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15849..16856)
DNA (1008bp) protein (336aa)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:GAO55002.1}; EC=5.4.99.2 {ECO:0000313|EMBL:GAO55002.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA67_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16874..17983)
DNA (1110bp) protein (370aa)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:GAO55002.1}; EC=5.4.99.2 {ECO:0000313|EMBL:GAO55002.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA67_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18073..18510)
DNA (438bp) protein (146aa)
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:GAO55001.1}; EC=5.1.99.1 {ECO:0000313|EMBL:GAO55001.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methylmalonyl-CoA epimerase (EC:5.1.99.1)
Methylmalonyl-CoA epimerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA68_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18512..19690)
DNA (1179bp) protein (393aa)
beta-ketothiolase (EC:2.3.1.9)
Acetyl-CoA C-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA69_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55000.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19717..21243)
DNA (1527bp) protein (509aa)
Propionyl-CoA carboxylase carboxyltransferase subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA70_NOVAD
carboxyl transferase
Carboxyl transferase {ECO:0000313|EMBL:KHS48826.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21358..22779
DNA (1422bp) protein (474aa)
XRE family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5E7_9SPHN
Transcriptional regulator of XRE family {ECO:0000313|EMBL:GAO54998.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
XRE family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_19
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22820..23740)
DNA (921bp) protein (307aa)
energy transducer TonB n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B61BDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA10414.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_79289_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23831..23950)
DNA (120bp) protein (40aa)
C4-dicarboxylate ABC transporter n=1 Tax=Sphingomonas elodea RepID=UPI000263101B
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
C4-dicarboxylate transporter
Displaying 20 items

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