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2019_SCN_bioreactor_t3_biofilm_scaffold_79762

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..719)
DNA (717bp) protein (239aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent metalloprotease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B670E4
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(849..1808)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZB27_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54311.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
curli production assembly/transport component csgg
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1928..2773)
DNA (846bp) protein (282aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5W2_9SPHN
tRNA(Ile)-lysidine synthetase-like
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2874..3839)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC96_NOVAD
TPR repeat containing exported protein {ECO:0000313|EMBL:GAO54313.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3993..5009)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC95_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54314.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5134..7407)
DNA (2274bp) protein (758aa)
Phosphoenolpyruvate-protein phosphotransferase of PTS system {ECO:0000313|EMBL:GAO54315.1}; EC=2.7.3.9 {ECO:0000313|EMBL:GAO54315.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PTSINtr with GAF domain, PtsP n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC94_NOVAD
phosphoenolpyruvate-protein phosphotransferase PtsP
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7769..7951
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC92_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54318.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7979..8575
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC91_NOVAD
Transcriptional regulator {ECO:0000313|EMBL:GAO54319.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8633..9583
DNA (951bp) protein (317aa)
beta-lactamase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3B517
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:GAO54320.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9565..10269
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC87_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54321.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10337..11086
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC86_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54322.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11143..12129
DNA (987bp) protein (329aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Quinolinate synthase A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC85_NOVAD
quinolinate synthetase
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12282..13184)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC84_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54324.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13271..14380
DNA (1110bp) protein (370aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC83_NOVAD
N-ethylmaleimide reductase {ECO:0000313|EMBL:GAO54325.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NADH:flavin oxidoreductase/NADH oxidase
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14393..15289
DNA (897bp) protein (299aa)
Citrate lyase beta chain {ECO:0000313|EMBL:GAO54326.1}; EC=4.1.3.6 {ECO:0000313|EMBL:GAO54326.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HpcH/HpaI aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC82_NOVAD
HpcH/HpaI aldolase
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15305..15742)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC81_NOVAD
Proline-rich protein {ECO:0000313|EMBL:GAO54327.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15739..16425)
DNA (687bp) protein (229aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218471}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Octanoyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=LIPB_NOVAD
lipB; lipoate-protein ligase B
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16575..17393
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC79_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54329.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17394..18020)
DNA (627bp) protein (209aa)
Generic methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC78_NOVAD
Phospholipid N-methyltransferase {ECO:0000313|EMBL:GAO54330.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
generic methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18234..18866
DNA (633bp) protein (211aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC77_NOVAD
Multidrug resistance protein {ECO:0000313|EMBL:GAO54331.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_79762_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18866..19309
DNA (444bp) protein (148aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC77_NOVAD
Multidrug resistance protein {ECO:0000313|EMBL:GAO54331.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
Displaying 21 items

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