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2019_SCN_bioreactor_t3_biofilm_scaffold_48872

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(298..768)
DNA (471bp) protein (157aa)
Transcriptional regulator n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC15_NOVAD
Zinc uptake regulation protein ZUR {ECO:0000313|EMBL:GAO54475.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(833..1510)
DNA (678bp) protein (226aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methionine sulfoxide reductase A (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC16_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1510..1677)
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54473.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2685)
DNA (783bp) protein (261aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:GAO54472.1}; EC=3.1.11.2 {ECO:0000313|EMBL:GAO54472.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC18_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2682..3032)
DNA (351bp) protein (117aa)
HesB/YadR/YfhF n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC19_NOVAD
Iron binding protein from the hesB_iscA_sufA family {ECO:0000313|EMBL:GAO54471.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HesB/YadR/YfhF
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3317..3751)
DNA (435bp) protein (145aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:GAO54469.1}; EC=1.1.1.205 {ECO:0000313|EMBL:GAO54469.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
inosine-5-monophosphate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2F127
signal-transduction protein
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3938..4237
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3B1C4
Uncharacterized protein {ECO:0000313|EMBL:GAO54468.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4260..4634)
DNA (375bp) protein (125aa)
ferredoxin n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002E5F3DB
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:GAO54467.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ferredoxin-like
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4631..5062)
DNA (432bp) protein (144aa)
thioesterase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5510F
Blr5884 {ECO:0000313|EMBL:GAO54466.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioesterase superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5066..7201)
DNA (2136bp) protein (712aa)
S9C family peptidase (EC:3.4.-.-)
UPI0003CFC87B related cluster n=1 Tax=unknown RepID=UPI0003CFC87B
Alanyl dipeptidyl peptidase {ECO:0000313|EMBL:GAO54465.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7229..9151)
DNA (1923bp) protein (641aa)
Type I secretion outer membrane protein, TolC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBY8_NOVAD
Type I secretion outer membrane protein, tolC {ECO:0000313|EMBL:GAO54463.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Type I secretion outer membrane protein, TolC
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9157..9765)
DNA (609bp) protein (203aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:GAO54462.1}; EC=2.1.1.77 {ECO:0000313|EMBL:GAO54462.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z624_9SPHN
protein-L-isoaspartate(D-aspartate) O-methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_48872_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10033..11280
DNA (1248bp) protein (416aa)
Fumarate hydratase class I, aerobic {ECO:0000313|EMBL:GAO54461.1}; EC=4.2.1.2 {ECO:0000313|EMBL:GAO54461.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fumarase (EC:4.2.1.2)
Fumarase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBY6_NOVAD
Displaying 13 items

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