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2019_SCN_bioreactor_t3_biofilm_scaffold_18584

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..369
DNA (369bp) protein (123aa)
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y4_9SPHN
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

595..2919
DNA (2325bp) protein (775aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2FD88
TonB-dependent receptor {ECO:0000313|EMBL:GAO55581.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3080..3517
DNA (438bp) protein (146aa)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:GAO55579.1}; EC=5.3.1.6 {ECO:0000313|EMBL:GAO55579.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Novosphingobium sp. AP12 RepID=J3AF11_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_4
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3763..3921)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FSA9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDS99561.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4920..5129
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55577.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5133..5594
DNA (462bp) protein (154aa)
Transcriptional repressor NrdR n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y0_9SPHN
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nrdR; transcriptional regulator NrdR
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5591..6340
DNA (750bp) protein (250aa)
rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B72A4D
tRNA:Cm32/Um32 methyltransferase {ECO:0000313|EMBL:GAO55575.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA/rRNA methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6359..6688)
DNA (330bp) protein (110aa)
UPI0003D067B5 related cluster n=1 Tax=unknown RepID=UPI0003D067B5
Isochorismate pyruvate-lyase {ECO:0000313|EMBL:GAO55574.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chorismate mutase
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6924..7535
DNA (612bp) protein (204aa)
30S ribosomal protein S4 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS4_NOVAD
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsD; 30S ribosomal protein S4
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7719..7916
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B78F
Uncharacterized protein {ECO:0000313|EMBL:GAO55572.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7930..9921)
DNA (1992bp) protein (664aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VEP0_CAUST
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:GAO55571.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
prolyl oligopeptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10009..11133)
DNA (1125bp) protein (375aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3A415
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11226..11981
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G638_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55569.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_14
unknown

Not on your lists

12186..13085
DNA (900bp) protein (300aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_18584_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..14065)
DNA (1014bp) protein (338aa)
UPF0176 protein LH128_28448 n=1 Tax=Sphingomonas sp. LH128 RepID=J8V9M0_9SPHN
UPF0176 protein NMD1_02719 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14173..15711
DNA (1539bp) protein (513aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D5_NOVAD
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO55566.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15771..17204)
DNA (1434bp) protein (478aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO55565.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO55565.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase (NAD+) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D4_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17248..18360)
DNA (1113bp) protein (371aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO55564.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO55564.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D3_NOVAD
alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18553..19395)
DNA (843bp) protein (281aa)
sorbitol dehydrogenase (EC:1.1.1.14)
UPI0003D01120 related cluster n=1 Tax=unknown RepID=UPI0003D01120
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO55563.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19414..20640)
DNA (1227bp) protein (409aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO55562.1}; EC=1.3.8.7 {ECO:0000313|EMBL:GAO55562.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C6_NOVAD
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20662..21399)
DNA (738bp) protein (246aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C7_NOVAD
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:GAO55561.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21488..23848)
DNA (2361bp) protein (787aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55560.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23970..24989
DNA (1020bp) protein (340aa)
Helix-turn-helix, AraC domain protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDE5_9SPHN
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO55559.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Helix-turn-helix AraC domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25136..26677
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380A1AE
Uncharacterized protein {ECO:0000313|EMBL:GAO55558.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26679..27314
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380A1AE
Uncharacterized protein {ECO:0000313|EMBL:GAO55558.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27314..28558
DNA (1245bp) protein (415aa)
linC; linalool 8-monooxygenase (EC:1.14.99.28)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000369EAC0
Uncharacterized protein {ECO:0000313|EMBL:GAO55557.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28570..29436
DNA (867bp) protein (289aa)
AraC family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B55707
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO55556.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29506..30345
DNA (840bp) protein (280aa)
glycosyl transferase family 1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B68DE7
Glutathione-regulated potassium-efflux system ATP-binding protein {ECO:0000313|EMBL:GAO55555.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
Displaying 28 items

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