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2019_SCN_bioreactor_t3_biofilm_scaffold_115787

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..11735)
DNA (11733bp) protein (3911aa)
Filamentous hemagglutinin family outer membrane protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKY1_VARPS
filamentous hemagglutinin family outer membrane protein
Filamentous hemagglutinin family outer membrane protein {ECO:0000313|EMBL:ACS21132.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11746..13485)
DNA (1740bp) protein (580aa)
Hemolysin secretion/activation protein ShlB/FhaC/HecB n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N7I3_9GAMM
Channel-forming transporter/cytolysins activator of tpsB family {ECO:0000313|EMBL:GAO56404.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hemolysin activator HlyB domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13745..14371
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000348AF23
DNA-binding response regulator {ECO:0000313|EMBL:GAO56405.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
corR; response regulator protein
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14368..15360
DNA (993bp) protein (331aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQR2_POLNA
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAO56406.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
integral membrane sensor hybrid histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15362..16033
DNA (672bp) protein (224aa)
Putative histidine kinase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGD8_AZOBR
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAO56406.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16795..17007)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037FFB05
Uncharacterized protein {ECO:0000313|EMBL:KHS45925.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17000..18238)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B162B
Conjugation TrbI family protein {ECO:0000313|EMBL:KHS45924.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
conjugal transfer protein TrbI
2019_SCN_bioreactor_t3_biofilm_scaffold_115787_8
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18235..18906)
DNA (672bp) protein (224aa)
P-type conjugative transfer protein TrbG n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UP48_9CYAN
conjugal transfer protein TrbG
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
Displaying 8 items

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