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2019_SCN_bioreactor_t3_biofilm_scaffold_116276

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1..1038)
DNA (1038bp) protein (346aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Valine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E1_NOVAD
valyl-tRNA synthetase
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1188..2318
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E2_NOVAD
ABC-type transport system permease component {ECO:0000313|EMBL:GAO55063.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2315..3148
DNA (834bp) protein (278aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E3_NOVAD
Methionine ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAO55064.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3167..4105
DNA (939bp) protein (313aa)
Mammalian cell entry related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E4_NOVAD
ABC-type transport system periplasmic component {ECO:0000313|EMBL:GAO55065.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4102..4710
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E5_NOVAD
Membrane lipoprotein lipid attachment site containing protein {ECO:0000313|EMBL:GAO55066.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4727..5422)
DNA (696bp) protein (232aa)
ATP12 ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55067.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATP12 ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5419..5643)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B66EC4
Uncharacterized protein {ECO:0000313|EMBL:GAO55068.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5640..6932)
DNA (1293bp) protein (431aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4E8_NOVAD
Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C {ECO:0000313|EMBL:GAO55069.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HAD family hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6932..8122)
DNA (1191bp) protein (397aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4F0_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8119..8520)
DNA (402bp) protein (134aa)
camphor resistance protein CrcB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=UPI00003C8060
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
camphor resistance protein CrcB
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8732..8938
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZNF6_9SPHN
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
30S ribosomal protein S21
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9124..9702
DNA (579bp) protein (193aa)
peptidylprolyl isomerase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B64D87
Possible peptidyl-prolyl isomerase {ECO:0000313|EMBL:GAO55074.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FKBP-type peptidylprolyl isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9798..10100
DNA (303bp) protein (101aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Novosphingobium sp. AP12 RepID=J2GEG6_9SPHN
glutamyl-tRNA amidotransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10100..11596
DNA (1497bp) protein (499aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GATA_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11691..13184
DNA (1494bp) protein (498aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBL5_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13222..13974)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69EB5
Uncharacterized protein {ECO:0000313|EMBL:GAO55078.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14001..14645)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47206
Uncharacterized protein {ECO:0000313|EMBL:GAO55079.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..15106)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G0_NOVAD
Bsr5794 protein {ECO:0000313|EMBL:GAO55080.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116276_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15154..17619)
DNA (2466bp) protein (822aa)
peptidase M16 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B570A3
Peptidase of M16 family {ECO:0000313|EMBL:GAO55081.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M16-like protein
Displaying 19 items

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