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2019_SCN_bioreactor_t3_biofilm_scaffold_38734

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..468)
DNA (468bp) protein (156aa)
signal recognition particle n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4EA84
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
signal recognition particle subunit FFH/SRP54 (srp54)
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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761..1570
DNA (810bp) protein (270aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8H7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1567..2769
DNA (1203bp) protein (401aa)
MiaB-like tRNA modifying enzyme n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCJ0_9SPHN
tRNA-t(6)A37 methylthiotransferase {ECO:0000313|EMBL:GAO56308.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MiaB-like tRNA modifying enzyme
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2766..3704
DNA (939bp) protein (313aa)
Signal recognition particle receptor FtsY n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8H9_NOVAD
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
signal recognition particle-docking protein FtsY
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3701..4129
DNA (429bp) protein (143aa)
septation protein A n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3DF39
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
intracellular septation protein A
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4288..4863
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8I1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56311.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5010..5351
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6DDDC
Uncharacterized protein {ECO:0000313|EMBL:GAO56312.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative secreted protein
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5402..6274)
DNA (873bp) protein (291aa)
Probable potassium transport system protein kup 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=KUP1_NOVAD
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
K+ potassium transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6240..7028)
DNA (789bp) protein (263aa)
Probable potassium transport system protein kup 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=KUP1_NOVAD
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
K+ potassium transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7189..7896)
DNA (708bp) protein (236aa)
Tetratricopeptide TPR_4 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8I6_NOVAD
Cytochrome c heme lyase subunit ccmH {ECO:0000313|EMBL:GAO56314.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7893..8363)
DNA (471bp) protein (157aa)
cytochrome C biogenesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B55A81
Cytochrome c heme lyase subunit ccmL {ECO:0000313|EMBL:GAO56315.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome C biogenesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8363..8932)
DNA (570bp) protein (190aa)
Periplasmic protein thiol n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8I8_NOVAD
Cytochrome c-type biogenesis protein ccmG/dsbE, thiol:disulfide oxidoreductase {ECO:0000313|EMBL:GAO56316.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
periplasmic protein thiol
2019_SCN_bioreactor_t3_biofilm_scaffold_38734_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8929..10392)
DNA (1464bp) protein (488aa)
Cytochrome c assembly protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8I9_NOVAD
Cytochrome c heme lyase subunit ccmF {ECO:0000313|EMBL:GAO56317.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c assembly protein
Displaying 13 items

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