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2019_SCN_bioreactor_t3_biofilm_scaffold_40905

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..398
DNA (396bp) protein (132aa)
Protein HflC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G306_NOVAD
HflC protein {ECO:0000313|EMBL:GAO53796.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

507..2045
DNA (1539bp) protein (513aa)
Peptidase S1C, Do n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G307_NOVAD
HtrA protease/chaperone protein {ECO:0000313|EMBL:GAO53797.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase S1C, Do
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2273..4498)
DNA (2226bp) protein (742aa)
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:GAO53798.1}; EC=2.4.1.129 {ECO:0000313|EMBL:GAO53798.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
penicillin-binding protein 1A (EC:2.4.1.129)
Penicillin-binding protein 1A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G309_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4659..5057)
DNA (399bp) protein (133aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein-methionine-S-oxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G310_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5087..5527)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WI29_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53800.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5520..6530)
DNA (1011bp) protein (337aa)
Protein QmcA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHA4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53801.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6580..7299)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G311_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53802.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7466..7810)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G312_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53803.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7936..8469
DNA (534bp) protein (178aa)
Putative transcriptional regulator n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G313_NOVAD
Transcriptional regulator of hxlR family {ECO:0000313|EMBL:GAO53804.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8539..8832)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G314_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53805.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8959..9225
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G315_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53806.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9269..10123
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G316_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53807.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10116..10979
DNA (864bp) protein (288aa)
Metallophosphoesterase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G317_NOVAD
DNA repair exonuclease {ECO:0000313|EMBL:GAO53808.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
metallophosphoesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_40905_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11028..12239
DNA (1212bp) protein (404aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17 6.1.1.24)
glutamyl-tRNA synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4571C
Displaying 14 items

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