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2019_SCN_bioreactor_t3_biofilm_scaffold_41827

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..446)
DNA (444bp) protein (148aa)
ammonia channel protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36B5D
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ammonium transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(470..808)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6B7_9SPHN
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:GAO54531.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nitrogen regulatory protein P-II
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_3
unknown

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1176..1436
DNA (261bp) protein (87aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_41827_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1772..2494)
DNA (723bp) protein (241aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAI4_NOVAD
Metal-dependent hydrolase {ECO:0000313|EMBL:GAO54530.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
endonuclease/exonuclease/phosphatase
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2550..3419)
DNA (870bp) protein (290aa)
alpha/beta hydrolase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000300932D
Alpha/beta hydrolase fold {ECO:0000313|EMBL:GAO54529.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3500..5020)
DNA (1521bp) protein (507aa)
Peptide chain release factor 3 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAI6_NOVAD
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptide chain release factor 3
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5093..5485)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54527.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5482..6381)
DNA (900bp) protein (300aa)
Aldose 1-epimerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6B4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54526.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldose 1-epimerase
2019_SCN_bioreactor_t3_biofilm_scaffold_41827_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6448..7698)
DNA (1251bp) protein (417aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B791EC
Displaying 9 items

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