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2019_SCN_bioreactor_t3_biofilm_scaffold_34086

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..176)
DNA (174bp) protein (58aa)
UPI0003D65C60 related cluster n=1 Tax=unknown RepID=UPI0003D65C60
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
porin
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239..1528)
DNA (1290bp) protein (430aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:GAO56280.1}; EC=2.1.1.79 {ECO:0000313|EMBL:GAO56280.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane fatty acid synthase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBA1_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2400..4445
DNA (2046bp) protein (682aa)
peptidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69AC6
Uncharacterized protein {ECO:0000313|EMBL:GAO56279.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dipeptidyl-peptidase 7
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4403..5722)
DNA (1320bp) protein (440aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:GAO56278.1}; EC=2.1.1.79 {ECO:0000313|EMBL:GAO56278.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B732C5
cyclopropane-fatty-acyl-phospholipid synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5844..5993)
DNA (150bp) protein (50aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
50S rRNA methyltransferase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037EDEC5
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6152..6895)
DNA (744bp) protein (248aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RLMN_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7188..7862
DNA (675bp) protein (225aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7000A
Outer membrane protein {ECO:0000313|EMBL:GAO56275.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7956..8468)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B794F9
Mlr4354 like protein {ECO:0000313|EMBL:GAO56274.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8473..8676)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VUE3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56273.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8676..8867)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSB7_9SPHN
Msr1475 protein {ECO:0000313|EMBL:GAO56272.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8867..9508)
DNA (642bp) protein (214aa)
Phosphoglycerate/bisphosphoglycerate mutase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D9_NOVAD
Phosphoglycerate mutase family 4 {ECO:0000313|EMBL:GAO56271.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoglycerate/bisphosphoglycerate mutase
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9549..10037)
DNA (489bp) protein (163aa)
transcription elongation factor GreB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B61D73
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GreA/GreB family elongation factor
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10228..12228)
DNA (2001bp) protein (667aa)
Lytic transglycosylase, catalytic n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D7_NOVAD
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:GAO56269.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic transglycosylase catalytic subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12348..12950
DNA (603bp) protein (201aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z821_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13267..14049)
DNA (783bp) protein (261aa)
D-beta-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:GAO56267.1}; EC=1.1.1.30 {ECO:0000313|EMBL:GAO56267.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
3-hydroxybutyrate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6E516
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14229..14990)
DNA (762bp) protein (254aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69195
Ferredoxin reductase {ECO:0000313|EMBL:GAO56266.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
patatin
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15161..15655
DNA (495bp) protein (165aa)
SsrA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z824_9SPHN
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
smpB; SsrA-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_34086_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15710..16309
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56264.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 18 items

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