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2019_SCN_bioreactor_t3_biofilm_scaffold_11810

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1442
DNA (1440bp) protein (480aa)
Peptidase M28 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WI06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54912.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M28
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1474..2448
DNA (975bp) protein (325aa)
Agmatine deiminase {ECO:0000313|EMBL:GAO54913.1}; EC=3.5.3.12 {ECO:0000313|EMBL:GAO54913.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Peptidyl-arginine deiminase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDS4_9SPHN
peptidyl-arginine deiminase
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2458..4011)
DNA (1554bp) protein (518aa)
Major facilitator transporter n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDR2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54914.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MFS transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3998..4714)
DNA (717bp) protein (239aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=QUEC_NOVAD
ExsB
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4786..5226)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3K0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54917.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5337..6245)
DNA (909bp) protein (303aa)
Hsp33 protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J9_NOVAD
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Hsp33 protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6267..7193)
DNA (927bp) protein (309aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=OTC_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7190..8383)
DNA (1194bp) protein (398aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
argD; acetylornithine transaminase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8520..8699)
DNA (180bp) protein (60aa)
Cold-shock DNA-binding protein family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J6_NOVAD
Cold shock protein cspA {ECO:0000313|EMBL:GAO54921.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cold-shock DNA-binding protein family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8671..9321)
DNA (651bp) protein (217aa)
Cold-shock DNA-binding protein family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J6_NOVAD
CspA family cold shock protein {ECO:0000313|EMBL:KHS48037.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
cold-shock DNA-binding protein family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9636..10070
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J5_NOVAD
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:GAO54923.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10086..10520
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54924.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10525..11445
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J3_NOVAD
Sterol desaturase {ECO:0000313|EMBL:GAO54925.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11511..11828
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HZE7_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF90572.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12012..12623)
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J2_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO54926.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12818..15151
DNA (2334bp) protein (778aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54927.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15286..16617)
DNA (1332bp) protein (444aa)
UDP-glucose dehydrogenase {ECO:0000313|EMBL:GAO54928.1}; EC=1.1.1.22 {ECO:0000313|EMBL:GAO54928.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J0_NOVAD
UDP-glucose/GDP-mannose dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16598..17728)
DNA (1131bp) protein (377aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:GAO54929.1}; EC=5.1.3.14 {ECO:0000313|EMBL:GAO54929.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17924..19240
DNA (1317bp) protein (439aa)
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I8_NOVAD
UDP-glucose/GDP-mannose dehydrogenase family protein {ECO:0000313|EMBL:GAO54930.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-glucose/GDP-mannose dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19341..20339
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:GAO54931.1}; EC=4.2.1.46 {ECO:0000313|EMBL:GAO54931.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I7_NOVAD
NAD-dependent epimerase/dehydratase
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20350..20898)
DNA (549bp) protein (183aa)
Superoxide dismutase [Cu-Zn] {ECO:0000313|EMBL:GAO54932.1}; EC=1.15.1.1 {ECO:0000313|EMBL:GAO54932.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Superoxide dismutase [Cu-Zn] n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL42_9SPHN
superoxide dismutase, copper/zinc binding
2019_SCN_bioreactor_t3_biofilm_scaffold_11810_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20993..21262)
DNA (270bp) protein (90aa)
Uncharacterized protein (Fragment) n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JA01_9SPHN
Outer membrane protein A {ECO:0000313|EMBL:GAO54933.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
OmpA/MotB protein
Displaying 22 items

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