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2019_SCN_bioreactor_t3_biofilm_scaffold_14637

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..593)
DNA (591bp) protein (197aa)
DedA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55912.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(641..1591)
DNA (951bp) protein (317aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione synthetase (EC:6.3.2.3)
glutathione synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B39810
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1617..1979)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B432B2
UPF0102 protein NMD1_03062 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1976..2815)
DNA (840bp) protein (280aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K0_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2887..4020
DNA (1134bp) protein (378aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J9_NOVAD
ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:GAO55908.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
extracellular ligand-binding receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4147..6156
DNA (2010bp) protein (670aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA topoisomerase 4 subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6293..6676
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VW22_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55906.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6737..7429)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B361D7
Uncharacterized protein {ECO:0000313|EMBL:GAO55904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7762..8538
DNA (777bp) protein (259aa)
ATPase AAA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9E1_9SPHN
ATPase associated with various cellular activities, AAA_5 {ECO:0000313|EMBL:GAO55903.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8662..9402)
DNA (741bp) protein (247aa)
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J3_NOVAD
Glutathione S-transferase {ECO:0000313|EMBL:GAO55900.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9497..9937
DNA (441bp) protein (147aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J2_NOVAD
Gfa-like protein {ECO:0000313|EMBL:GAO55899.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione-dependent formaldehyde-activating protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9941..11122
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55898.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..12358)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I6_NOVAD
Alternate gene name: yzbB {ECO:0000313|EMBL:GAO55897.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..12897)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55896.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12943..14172
DNA (1230bp) protein (410aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009778};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYY_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14396..14596
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9D4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55894.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..16839
DNA (2133bp) protein (711aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I0N1_9SPHN
Zinc-regulated outer membrane receptor {ECO:0000313|EMBL:GAO55892.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16896..18233
DNA (1338bp) protein (446aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I2_NOVAD
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO55891.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18237..19052
DNA (816bp) protein (272aa)
Cysteine synthase {ECO:0000313|EMBL:GAO55890.1}; EC=2.5.1.47 {ECO:0000313|EMBL:GAO55890.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteine synthase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B6E82D
cysteine synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19057..19776
DNA (720bp) protein (240aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Novosphingobium sp. AP12 RepID=J2GTJ7_9SPHN
Dienelactone hydrolase family protein {ECO:0000313|EMBL:GAO55889.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dienelactone hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20031..21599
DNA (1569bp) protein (523aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GX67_SPHAL
TonB-dependent receptor {ECO:0000313|EMBL:GAO55888.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21677..22153
DNA (477bp) protein (159aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GX67_SPHAL
TonB-dependent receptor {ECO:0000313|EMBL:GAO55888.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22158..23207
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EC62E8
Uncharacterized protein {ECO:0000313|EMBL:GAO55887.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PepSY-associated TM helix family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23204..23845)
DNA (642bp) protein (214aa)
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:GAO55886.1}; EC=2.8.3.6 {ECO:0000313|EMBL:GAO55886.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
butyryl-CoA:acetate CoA transferase (EC:2.8.3.8)
Butyryl-CoA:acetate CoA transferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEG1_SPHWW
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23862..24578)
DNA (717bp) protein (239aa)
3-oxoadipate CoA-transferase subunit A {ECO:0000313|EMBL:GAO55885.1}; EC=2.8.3.6 {ECO:0000313|EMBL:GAO55885.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
3-oxoacid CoA-transferase, A subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEG2_SPHWW
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24671..25435
DNA (765bp) protein (255aa)
IclR family transcriptional regulator n=1 Tax=Sphingobium xenophagum RepID=UPI00036BA307
Pca regulon regulatory protein pcaR {ECO:0000313|EMBL:GAO55884.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-ketoadipate pathway transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_27
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25850..26386)
DNA (537bp) protein (179aa)
integrase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D0EFB
Integrase {ECO:0000313|EMBL:KFG89572.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
transposase
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_28
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26467..26745)
DNA (279bp) protein (93aa)
Transposase A1 n=4 Tax=Sphingomonadaceae RepID=A9ZLZ6_SPHMC
Transposase {ECO:0000313|EMBL:AJW29351.1}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
transposase IS3/IS911 family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_29
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26811..27074)
DNA (264bp) protein (88aa)
silP1; Silver exporting P-type ATPase (EC:3.6.3.53)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037192AD
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EZP81012.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_30
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27109..28878)
DNA (1770bp) protein (590aa)
Oleate hydratase (EC:4.2.1.53)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QQR4_BREDI
Uncharacterized protein {ECO:0000313|EMBL:AHE53655.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Displaying 30 items

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