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2019_SCN_bioreactor_t3_biofilm_scaffold_14882

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..572
DNA (570bp) protein (190aa)
Acyl-carrier domain protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I2_NOVAD
(Acyl-carrier-protein) S-malonyltransferase {ECO:0000313|EMBL:GAO56353.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acyl carrier protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

640..1050
DNA (411bp) protein (137aa)
Low molecular weight protein tyrosine phosphatase {ECO:0000313|EMBL:GAO56352.1}; EC=3.1.3.48 {ECO:0000313|EMBL:GAO56352.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein tyrosine phosphatase (EC:3.1.3.48)
Protein tyrosine phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I1_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1161..2267)
DNA (1107bp) protein (369aa)
Cysteine synthase B {ECO:0000313|EMBL:GAO56351.1}; EC=2.5.1.47 {ECO:0000313|EMBL:GAO56351.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9G7_NOVAD
pyridoxal-5'-phosphate-dependent enzyme subunit beta
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2433..3377
DNA (945bp) protein (315aa)
TonB-denpendent receptor n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A545A6
TonB-dependent receptor {ECO:0000313|EMBL:GAO56350.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3433..5031
DNA (1599bp) protein (533aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FAF02D
TonB-dependent receptor {ECO:0000313|EMBL:GAO56350.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5031..6053
DNA (1023bp) protein (341aa)
Phytase domain protein {ECO:0000313|EMBL:GAO56349.1}; EC=3.1.3.8 {ECO:0000313|EMBL:GAO56349.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-phytase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPZ8_9SPHN
phy; 3-phytase
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6090..6560)
DNA (471bp) protein (157aa)
Putative nickel-responsive regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z384_9SPHN
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6735..7295
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IML3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56347.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7316..8320
DNA (1005bp) protein (335aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO56346.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO56346.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECE0_9SPHN
alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8488..10893
DNA (2406bp) protein (802aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lon-A peptidase (EC:3.4.21.53)
Lon protease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8L8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11119..11391
DNA (273bp) protein (91aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3N1_9SPHN
Histone-like DNA-binding protein {ECO:0000313|EMBL:EGD60845.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
histone-like DNA-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11519..12370)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8L6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56343.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12388..13230)
DNA (843bp) protein (281aa)
rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E1BF
23S rRNA (Guanosine-2'-O-)-methyltransferase rlmB {ECO:0000313|EMBL:GAO56342.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RNA methyltransferase TrmH
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13665..14414
DNA (750bp) protein (250aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PSD_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14411..15274
DNA (864bp) protein (288aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:GAO56340.1}; EC=2.7.8.8 {ECO:0000313|EMBL:GAO56340.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CDP-alcohol phosphatidyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC90_9SPHN
CDP-alcohol phosphatidyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_16
unknown

Not on your lists

comp(15222..15497)
DNA (276bp) protein (92aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_14882_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15768..16523
DNA (756bp) protein (252aa)
30S ribosomal protein S2 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47E15
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsB; 30S ribosomal protein S2
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16654..17580
DNA (927bp) protein (309aa)
Elongation factor Ts n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC87_9SPHN
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tsf; elongation factor Ts
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17683..18489
DNA (807bp) protein (269aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00040749}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00040666};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyrH; uridylate kinase (EC:2.7.4.-)
Uridylate kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC86_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_14882_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18492..18602
DNA (111bp) protein (37aa)
Ribosome-recycling factor n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEX1_9SPHN
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribosome recycling factor
Displaying 20 items

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