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2019_SCN_bioreactor_t3_biofilm_scaffold_28651

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..535)
DNA (534bp) protein (178aa)
Crp/Fnr family transcription regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6023A
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases {ECO:0000313|EMBL:GAO56664.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Crp/FNR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(900..1388)
DNA (489bp) protein (163aa)
Flavin reductase-like, FMN-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G555_NOVAD
NADH-FMN oxidoreductase {ECO:0000313|EMBL:GAO56665.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flavin reductase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1425..1706)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G384_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56666.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_4
unknown

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2071..2304
DNA (234bp) protein (78aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_28651_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2399..3325)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G554_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56667.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3398..4621)
DNA (1224bp) protein (408aa)
Group 1 glycosyl transferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMY1_9BURK
Glycosyltransferase {ECO:0000313|EMBL:GAO56668.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
group 1 glycosyl transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4729..5709)
DNA (981bp) protein (327aa)
FMN-dependent enoyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:GAO56669.1}; EC=1.3.1.9 {ECO:0000313|EMBL:GAO56669.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2-nitropropane dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3R5_NOVAD
2-nitropropane dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5733..5996)
DNA (264bp) protein (88aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO56670.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO56670.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC33_9SPHN
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_9
unknown

Not on your lists

6294..6515
DNA (222bp) protein (74aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_28651_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6963..8168)
DNA (1206bp) protein (402aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO56671.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO56671.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSM3_SPHAL
acyl-CoA dehydrogenase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..9271)
DNA (1107bp) protein (369aa)
Short-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO56672.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO56672.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W972_9SPHN
acyl-CoA dehydrogenase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9388..10272)
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRM6_9SPHN
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO56673.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10330..11307)
DNA (978bp) protein (326aa)
Muconate cycloisomerase {ECO:0000313|EMBL:GAO56675.1}; EC=5.5.1.1 {ECO:0000313|EMBL:GAO56675.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
mandelate racemase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDCE
mandelate racemase
2019_SCN_bioreactor_t3_biofilm_scaffold_28651_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11292..12275)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W598_9GAMM
Protein often near L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:GAO56676.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 14 items

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