ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_30147

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..572
DNA (570bp) protein (190aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7C2_NOVAD
Short-chain dehydrodenase {ECO:0000313|EMBL:GAO56549.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

598..1614
DNA (1017bp) protein (339aa)
CoA reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B602C3
NADPH-dependent methylglyoxal reductase {ECO:0000313|EMBL:GAO56548.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroflavonol-4-reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2026..2775)
DNA (750bp) protein (250aa)
Oxidoreductase, molybdopterin binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7C1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56547.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2772..3683)
DNA (912bp) protein (304aa)
Cytochrome B561 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7C0_NOVAD
Thiosulfate reductase cytochrome B subunit {ECO:0000313|EMBL:GAO56546.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome B561
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3737..4732)
DNA (996bp) protein (332aa)
Phytoene synthase {ECO:0000313|EMBL:GAO56545.1}; EC=2.5.1.32 {ECO:0000313|EMBL:GAO56545.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Farnesyl-diphosphate farnesyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7B9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4729..5310)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7B8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56544.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5307..6785)
DNA (1479bp) protein (493aa)
phytoene dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B527E3
Phytoene dehydrogenase {ECO:0000313|EMBL:GAO56543.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amine oxidase
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6782..7993)
DNA (1212bp) protein (404aa)
Lycopene cyclase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7B6_NOVAD
Lycopene cyclase {ECO:0000313|EMBL:GAO56542.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lycopene cyclase
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8142..8693
DNA (552bp) protein (184aa)
UPF0314 protein Saro_1818 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Y1818_NOVAD
Intracellular septation protein {ECO:0000313|EMBL:GAO56541.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9078..9638
DNA (561bp) protein (187aa)
Flavin-containing monooxygenase FMO n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE35_9SPHN
Monooxygenase of flavin-binding family {ECO:0000313|EMBL:GAO56540.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flavin-containing monooxygenase FMO
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9629..10606
DNA (978bp) protein (326aa)
Flavin-containing monooxygenase FMO n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA48_9SPHN
Monooxygenase of flavin-binding family {ECO:0000313|EMBL:GAO56540.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flavin-containing monooxygenase FMO
2019_SCN_bioreactor_t3_biofilm_scaffold_30147_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10853..11443
DNA (591bp) protein (197aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Phosphomethylpyrimidine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=THIC_NOVAD
thiamine biosynthesis protein ThiC
Displaying 12 items

View Taxonomy