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2019_SCN_bioreactor_t3_biofilm_scaffold_126845

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..400)
DNA (399bp) protein (133aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nrdF; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4X8_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(512..898)
DNA (387bp) protein (129aa)
Conserved hypothetical membrane protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBQ2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54657.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1175..2209)
DNA (1035bp) protein (345aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBQ1_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3853..4101
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBQ0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54659.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transmembrane region and signal peptide prediction
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4356..5102)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA13_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54660.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5196..5882
DNA (687bp) protein (229aa)
PKHD-type hydroxylase NMD1_01763 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PKHD-type hydroxylase Y88_2854 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4F4_9SPHN
Fe(II)-dependent oxygenase superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6080..6961)
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q0_NOVAD
Transcriptional regulator {ECO:0000313|EMBL:GAO54662.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7115..8020)
DNA (906bp) protein (302aa)
CBS protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P9_NOVAD
Magnesium and cobalt efflux protein corC {ECO:0000313|EMBL:GAO54663.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8057..8551)
DNA (495bp) protein (165aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Endoribonuclease YbeY n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=YBEY_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8694..9731)
DNA (1038bp) protein (346aa)
PhoH-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P7_NOVAD
Phosphate starvation-inducible protein phoH {ECO:0000313|EMBL:GAO54665.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PhoH-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10005..10496
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035D7432
Uncharacterized protein {ECO:0000313|EMBL:GAO54667.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10697..12019)
DNA (1323bp) protein (441aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z750_9SPHN
(dimethylallyl)adenosine tRNA methylthiotransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12088..12858)
DNA (771bp) protein (257aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:GAO54669.1}; EC=2.3.1.51 {ECO:0000313|EMBL:GAO54669.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lyso-ornithine lipid acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P5_NOVAD
lyso-ornithine lipid acyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12842..13264)
DNA (423bp) protein (141aa)
Ferric uptake regulator family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z752_9SPHN
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:GAO54670.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ferric uptake regulator family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13347..13811)
DNA (465bp) protein (155aa)
MucR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34663
Transcriptional regulator {ECO:0000313|EMBL:GAO54671.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MucR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13973..14443)
DNA (471bp) protein (157aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P2_NOVAD
Ribosomal-protein-S18p-alanine acetyltransferase {ECO:0000313|EMBL:GAO54672.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GCN5-like N-acetyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14440..15069)
DNA (630bp) protein (210aa)
Peptidase M22, glycoprotease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P1_NOVAD
TsaB protein {ECO:0000313|EMBL:GAO54673.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M22, glycoprotease
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15097..15690)
DNA (594bp) protein (198aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase (EC:1.-.-.-)
Putative NADH dehydrogenase/NAD(P)H nitroreductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNE7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54674.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15749..16330)
DNA (582bp) protein (194aa)
Nitrogen-fixing NifU-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P0_NOVAD
NifU-like domain protein {ECO:0000313|EMBL:GAO54675.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nitrogen-fixing NifU-like
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16418..16717)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4N730_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAO54676.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16884..17477
DNA (594bp) protein (198aa)
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z757_9SPHN
Peptidyl-prolyl cis-trans isomerase, FKBP-type {ECO:0000313|EMBL:GAO54677.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FKBP-type peptidylprolyl isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_126845_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17535..18401
DNA (867bp) protein (289aa)
peptidase M16 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B71F38
Peptidase M16-like protein {ECO:0000313|EMBL:GAO54678.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M16-like protein
Displaying 22 items

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