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2019_SCN_bioreactor_t3_biofilm_scaffold_8934

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..278
DNA (276bp) protein (92aa)
YhhN-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G717_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56076.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..638)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G716_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56077.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(635..3361)
DNA (2727bp) protein (909aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5EE6E
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3682..5025
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G714_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56079.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5107..5634)
DNA (528bp) protein (176aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G713_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5827..6771
DNA (945bp) protein (315aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lipoyl synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=LIPA_NOVAD
lipoyl synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6778..7239
DNA (462bp) protein (154aa)
Cyclase/dehydrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G711_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56082.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cyclase/dehydrase
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7200..7496)
DNA (297bp) protein (99aa)
Possible competence-damaged protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7M2_9SPHN
C-terminal domain of cinA type S {ECO:0000313|EMBL:GAO56083.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
competence-damaged protein
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7515..8072)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G709_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56084.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8084..9283)
DNA (1200bp) protein (400aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000364E0FF
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9468..10382
DNA (915bp) protein (305aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA-dihydrouridine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A879_9SPHN
tRNA-dihydrouridine synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10432..11553
DNA (1122bp) protein (374aa)
Nitrogen regulation protein ntrB {ECO:0000313|EMBL:GAO56087.1}; EC=2.7.13.3 {ECO:0000313|EMBL:GAO56087.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.3.-)
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9Z0_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_8934_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11550..12737
DNA (1188bp) protein (396aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G705_NOVAD
Nitrogen regulation protein ntrC {ECO:0000313|EMBL:GAO56088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component sigma-54 specific Fis family transcriptional regulator
Displaying 13 items

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