ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_10239

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..144)
DNA (144bp) protein (48aa)
ABC-type transport system permease component n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z4A0_SPHJU
Lipoprotein releasing system transmembrane protein lolC {ECO:0000313|EMBL:GAO56154.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC-type transport system permease component
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141..1205)
DNA (1065bp) protein (355aa)
Secretion protein HylD n=1 Tax=Sphingobium baderi LL03 RepID=T0HX85_9SPHN
Membrane fusion protein {ECO:0000313|EMBL:GAO56155.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HlyD-family secretion protein
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1265..1909)
DNA (645bp) protein (215aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6X1_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1953..2450)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II82_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56157.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2550..3446)
DNA (897bp) protein (299aa)
Fructose-bisphosphate aldolase class I {ECO:0000313|EMBL:GAO56158.1}; EC=4.1.2.13 {ECO:0000313|EMBL:GAO56158.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6W9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3562..4749)
DNA (1188bp) protein (396aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PGK_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4838..5845)
DNA (1008bp) protein (336aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6W6_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5865..7802)
DNA (1938bp) protein (646aa)
Transketolase {ECO:0000313|EMBL:GAO56161.1}; EC=2.2.1.1 {ECO:0000313|EMBL:GAO56161.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6W5_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8008..8223
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z9T3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56162.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8220..8543
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6W3_NOVAD
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8750..9364
DNA (615bp) protein (205aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative 5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9T1_9SPHN
5-formyltetrahydrofolate cyclo-ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9361..9582
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46A30
Uncharacterized protein {ECO:0000313|EMBL:GAO56165.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10036..10629
DNA (594bp) protein (198aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=2 Tax=Sphingomonas aromaticivorans RepID=TYSY_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10763..12094
DNA (1332bp) protein (444aa)
Branched-chain alpha-keto acid dehydrogenase E1 component {ECO:0000313|EMBL:KHS48492.1}; EC=1.2.4.4 {ECO:0000313|EMBL:KHS48492.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6V7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12103..13155
DNA (1053bp) protein (351aa)
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit {ECO:0000313|EMBL:GAO56168.1}; EC=1.2.4.4 {ECO:0000313|EMBL:GAO56168.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6V8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_16
unknown

Not on your lists

comp(13542..13739)
DNA (198bp) protein (66aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_10239_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14167..14586
DNA (420bp) protein (140aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KHS48494.1}; EC=2.3.1.168 {ECO:0000313|EMBL:KHS48494.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.168)
Branched-chain alpha-keto acid dehydrogenase E2 component n=2 Tax=Sphingomonas aromaticivorans RepID=Q2G6V9_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_18
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14646..15227
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SBR5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP84749.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_10239_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..15677)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9S9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD58663.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
Displaying 19 items

View Taxonomy