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2019_SCN_bioreactor_t3_biofilm_scaffold_82800

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..208)
DNA (207bp) protein (69aa)
Molybdenum ABC transporter substrate-binding protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GTZ2_9SPHN
Molybdenum ABC transporter, periplasmic molybdenum-binding protein modA {ECO:0000313|EMBL:GAO55619.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molybdenum ABC transporter substrate-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

316..1950
DNA (1635bp) protein (545aa)
FAD dependent oxidoreductase n=2 Tax=Novosphingobium RepID=F6IIH5_9SPHN
NAD(FAD)-utilizing dehydrogenase, sll0175 homolog {ECO:0000313|EMBL:GAO55618.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2367..3239
DNA (873bp) protein (291aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD9_NOVAD
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3358..3816
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IU56_9SPHN
Cytochrome c {ECO:0000313|EMBL:GAO55616.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3816..4538
DNA (723bp) protein (241aa)
Ni/Fe-hydrogenase 1 b-type cytochrome subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R820_PHEZH
Ni,Fe-hydrogenase I cytochrome b subunit {ECO:0000313|EMBL:GAO55615.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ni/Fe-hydrogenase 1 b-type cytochrome subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4621..5838)
DNA (1218bp) protein (406aa)
Outer membrane efflux protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAR9_9SPHN
Heavy metal RND efflux outer membrane protein of czcC family {ECO:0000313|EMBL:GAO55614.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
outer membrane efflux protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5831..8959)
DNA (3129bp) protein (1043aa)
CzcA family heavy metal efflux protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS0_9SPHN
Cobalt-zinc-cadmium resistance protein czcA {ECO:0000313|EMBL:GAO55613.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heavy metal efflux system protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8964..10070)
DNA (1107bp) protein (369aa)
RND family efflux transporter MFP subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS1_9SPHN
Cobalt/zinc/cadmium efflux RND transporter of membrane fusion protein, czcB family {ECO:0000313|EMBL:GAO55612.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heavy metal efflux system protein
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10177..10833
DNA (657bp) protein (219aa)
Two component transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS2_9SPHN
DNA-binding response regulator {ECO:0000313|EMBL:GAO55611.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA-binding response regulator in two-component regulatory system
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10830..12209
DNA (1380bp) protein (460aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS3_9SPHN
two-component sensor histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12181..12684)
DNA (504bp) protein (168aa)
Transcriptional regulator, AsnC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAH1_NOVAD
PutR, transcriptional activator of putA and putP {ECO:0000313|EMBL:GAO55609.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AsnC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_82800_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12782..13864
DNA (1083bp) protein (361aa)
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8)
Bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55608.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 12 items

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