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2019_SCN_bioreactor_t3_biofilm_scaffold_55728

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..707)
DNA (705bp) protein (235aa)
Sodium:solute symporter n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I433_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53502.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sodium:solute symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(785..3523)
DNA (2739bp) protein (913aa)
Outer membrane cobalamin receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2HH64_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:GAO53503.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3683..4789)
DNA (1107bp) protein (369aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ20_9SPHN
anhydro-N-acetylmuramic acid kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4789..5646)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GWZ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53506.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5796..6869
DNA (1074bp) protein (358aa)
Glucosamine-6-phosphate deaminase [isomerizing], alternative {ECO:0000313|EMBL:GAO53507.1}; EC=3.5.99.6 {ECO:0000313|EMBL:GAO53507.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative phosphosugar isomerase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AP39_9SPHN
iron dicitrate transport regulator FecR
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6866..7924
DNA (1059bp) protein (353aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q489_9SPHN
N-acetylglucosamine 6-phosphate deacetylase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7921..8985
DNA (1065bp) protein (355aa)
Beta-N-acetylglucosaminidase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HH69_9SPHN
Hyaluronidase {ECO:0000313|EMBL:GAO53509.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hyaluronidase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9003..10718
DNA (1716bp) protein (572aa)
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lactate dehydrogenase (EC:1.1.1.28)
D-lactate dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ23_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10715..11581
DNA (867bp) protein (289aa)
N-acetylglucosamine kinase of eukaryotic type {ECO:0000313|EMBL:GAO53511.1}; EC=2.7.1.59 {ECO:0000313|EMBL:GAO53511.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HS48_9SPHN
ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11610..13088)
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0003608A8A
Uncharacterized protein {ECO:0000313|EMBL:GAO53512.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13350..15662
DNA (2313bp) protein (771aa)
Sensory box/GGDEF family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PE71_9SPHN
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAO53513.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15669..16325)
DNA (657bp) protein (219aa)
DSBA oxidoreductase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K2M8_STEMA
2-hydroxychromene-2-carboxylate isomerase {ECO:0000313|EMBL:GAO53514.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DSBA oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16405..16911)
DNA (507bp) protein (169aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN8_9SPHN
Major facilitator family transporter {ECO:0000313|EMBL:GAO53515.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_14
unknown

Not on your lists

16998..17474
DNA (477bp) protein (159aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_55728_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17698..18597)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS77_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53516.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18594..20222)
DNA (1629bp) protein (543aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:GAO53517.1}; EC=2.2.1.6 {ECO:0000313|EMBL:GAO53517.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Thiamine pyrophosphate enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN9_9SPHN
thiamine pyrophosphate enzyme
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20248..21225)
DNA (978bp) protein (326aa)
Alpha-ketoglutarate-dependent taurine dioxygenase {ECO:0000313|EMBL:GAO53518.1}; EC=1.14.11.17 {ECO:0000313|EMBL:GAO53518.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative R-2,4-dichlorophenoxypropionate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKP0_9SPHN
putative R-2,4-dichlorophenoxypropionate dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21322..23361)
DNA (2040bp) protein (680aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6C01F
Uncharacterized protein {ECO:0000313|EMBL:GAO53519.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_55728_19
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23415..23504
DNA (90bp) protein (30aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NUD1_AZOS1
Carboxymethylenebutenolidase {ECO:0000313|EMBL:KJR66931.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
Displaying 19 items

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