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2019_SCN_bioreactor_t3_biofilm_scaffold_56425

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_1
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..612)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000380C21D
TonB-dependent receptor
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1051..2376)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036FE8FC
Phage integrase {ECO:0000313|EMBL:KHS45875.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
integrase
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2763..3323)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8N7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56938.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3310..4290)
DNA (981bp) protein (327aa)
aminodeoxychorismate lyase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5EFD4
Uncharacterized protein {ECO:0000313|EMBL:GAO56939.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminodeoxychorismate lyase
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4347..5624)
DNA (1278bp) protein (426aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.41)
3-oxoacyl-ACP synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5CB97
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5796..6032)
DNA (237bp) protein (79aa)
Acyl carrier protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ACP_NOVAD
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acpP; acyl carrier protein
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6151..7212)
DNA (1062bp) protein (354aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37E20
Uncharacterized protein {ECO:0000313|EMBL:GAO56943.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8116..9327
DNA (1212bp) protein (404aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ribonuclease D n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P2_NOVAD
ribonuclease D
2019_SCN_bioreactor_t3_biofilm_scaffold_56425_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9332..10195
DNA (864bp) protein (288aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P3_NOVAD
Hydrogen peroxide-inducible genes activator {ECO:0000313|EMBL:GAO56945.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
Displaying 9 items

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