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2019_SCN_bioreactor_t3_biofilm_scaffold_100582

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1238
DNA (1236bp) protein (412aa)
potassium transporter n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6CE70
Cation:proton antiporter {ECO:0000313|EMBL:GAO53061.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative Na+/H+ antiporter
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1260..3200)
DNA (1941bp) protein (647aa)
Acetyl-CoA carboxylase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IU65_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53060.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyl-CoA carboxylase, biotin carboxylase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3226..4629)
DNA (1404bp) protein (468aa)
Alpha-galactosidase {ECO:0000313|EMBL:GAO53059.1}; EC=3.2.1.22 {ECO:0000313|EMBL:GAO53059.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alpha-galactosidase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVS1_CAUSK
alpha-galactosidase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5060..6085)
DNA (1026bp) protein (342aa)
esterase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD59
Uncharacterized protein {ECO:0000313|EMBL:GAO53058.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative esterase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6156..8531)
DNA (2376bp) protein (792aa)
Alpha/beta hydrolase domain-containing protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICQ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53057.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8557..10122)
DNA (1566bp) protein (522aa)
Alpha-N-arabinofuranosidase 2 {ECO:0000313|EMBL:GAO53056.1}; EC=3.2.1.55 {ECO:0000313|EMBL:GAO53056.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha-L-arabinofuranosidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD490
alpha-N-arabinofuranosidase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10221..11510)
DNA (1290bp) protein (430aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:GAO53055.1}; EC=4.2.1.9 {ECO:0000313|EMBL:GAO53055.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J7G5_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11532..12029)
DNA (498bp) protein (166aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:GAO53055.1}; EC=4.2.1.9 {ECO:0000313|EMBL:GAO53055.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroxyacid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5DEDF
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12062..13273)
DNA (1212bp) protein (404aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldose 1-epimerase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B529FD
aldose 1-epimerase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13374..14687
DNA (1314bp) protein (438aa)
MFS transporter n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H3H3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53053.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fucP; L-fucose permease
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14779..16305
DNA (1527bp) protein (509aa)
Ketoglutarate semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO53052.1}; EC=1.2.1.26 {ECO:0000313|EMBL:GAO53052.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aldehyde dehydrogenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICS8_9SPHN
aldehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16329..17330
DNA (1002bp) protein (334aa)
Fumarylacetoacetate (FAA) hydrolase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WX09_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53051.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17335..18261
DNA (927bp) protein (309aa)
D-galactose 1-dehydrogenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VI10_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53050.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
D-galactose 1-dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18427..19539
DNA (1113bp) protein (371aa)
xylan 1,4-beta-xylosidase (EC:3.2.1.37)
Glycosyl hydrolases 43 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSK8_9SPHN
Xylosidase/arabinosidase {ECO:0000313|EMBL:GAO53049.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19546..20994
DNA (1449bp) protein (483aa)
Xylulose kinase {ECO:0000313|EMBL:GAO53048.1}; EC=2.7.1.17 {ECO:0000313|EMBL:GAO53048.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAC0_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21002..22309
DNA (1308bp) protein (436aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
xylose isomerase (EC:5.3.1.5)
UPI0003CFD755 related cluster n=1 Tax=unknown RepID=UPI0003CFD755
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22349..23050
DNA (702bp) protein (234aa)
acetyl xylan esterase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002884AFB
Acetyl xylan esterase {ECO:0000313|EMBL:GAO53046.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyl xylan esterase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23062..24507
DNA (1446bp) protein (482aa)
Arabinan endo-1,5-alpha-L-arabinosidase {ECO:0000313|EMBL:GAO53045.1}; EC=3.2.1.99 {ECO:0000313|EMBL:GAO53045.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycoside hydrolase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289E23C
glycoside hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24608..25348
DNA (741bp) protein (247aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B49EF1
Transcriptional regulator of gntR family {ECO:0000313|EMBL:GAO53044.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25367..26878)
DNA (1512bp) protein (504aa)
Endo-1,4-beta-xylanase A {ECO:0000313|EMBL:GAO53043.1}; EC=3.2.1.8 {ECO:0000313|EMBL:GAO53043.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycoside hydrolase family protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD52
glycoside hydrolase family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26875..29538)
DNA (2664bp) protein (888aa)
Beta-glucosidase {ECO:0000313|EMBL:GAO53042.1}; EC=3.2.1.21 {ECO:0000313|EMBL:GAO53042.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative beta-glucosidase (EC:3.2.1.21)
UPI0003D5E2ED related cluster n=1 Tax=unknown RepID=UPI0003D5E2ED
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29630..31192)
DNA (1563bp) protein (521aa)
Tryptophan halogenase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VGN3_CAUST
Uncharacterized protein {ECO:0000313|EMBL:GAO53041.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tryptophan halogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31272..33926)
DNA (2655bp) protein (885aa)
TonB-denpendent receptor n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KBB8_9SPHN
N-acetylglucosamine-regulated tonB-dependent outer membrane receptor {ECO:0000313|EMBL:GAO53040.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34388..35080
DNA (693bp) protein (231aa)
multidrug transporter n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00036B7E0C
SapC-like S-layer protein {ECO:0000313|EMBL:GAO53039.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35086..36096
DNA (1011bp) protein (337aa)
transcription factor jumonji jmjC domain-containing protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289A4B3
Pass1-related protein {ECO:0000313|EMBL:GAO53038.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcription factor jumonji jmjC domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36215..37630)
DNA (1416bp) protein (472aa)
MFS transporter, SP family, sugar:H+ symporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICR5_9SPHN
D-xylose proton-symporter xylE {ECO:0000313|EMBL:GAO53037.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MFS transporter SP family sugar:H+ symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37873..38877
DNA (1005bp) protein (335aa)
LacI family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICR6_9SPHN
Transcriptional regulator of lacI family {ECO:0000313|EMBL:GAO53036.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LacI family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_28
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

39045..39707
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20250.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39855..41759)
DNA (1905bp) protein (635aa)
exported putative sialate O-acetylesterase (EC:3.1.1.53)
Exported putative sialate O-acetylesterase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICR7_9SPHN
Sialic acid-specific 9-O-acetylesterase {ECO:0000313|EMBL:GAO53035.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_100582_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41756..42652)
DNA (897bp) protein (299aa)
Xylonolactonase {ECO:0000313|EMBL:GAO53034.1}; EC=3.1.1.68 {ECO:0000313|EMBL:GAO53034.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Gluconolactonase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICR8_9SPHN
gluconolactonase
Displaying items 1-30 of 69 in total

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