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2019_SCN_bioreactor_t3_biofilm_scaffold_65537

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31..639
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCZ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53755.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(662..1999)
DNA (1338bp) protein (446aa)
Glycosyl transferase, family 39 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4X3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53756.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyl transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2090..3298
DNA (1209bp) protein (403aa)
cystathionine gamma-synthase (EC:2.5.1.48)
O-succinylhomoserine sulfhydrylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B615
Uncharacterized protein {ECO:0000313|EMBL:GAO53757.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3391..4731
DNA (1341bp) protein (447aa)
signal transduction histidine kinase (EC:2.7.3.-)
Signal transduction histidine kinase {ECO:0000313|EMBL:ABD27102.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABD27102.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4X1_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4761..5009)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4X0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53759.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5078..5638)
DNA (561bp) protein (187aa)
TspO and MBR like proteins n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52BDD
CrtK protein {ECO:0000313|EMBL:GAO53760.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TspO and MBR like proteins
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5751..6350)
DNA (600bp) protein (200aa)
hemolysin n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70CF1
RNA binding methyltransferase ftsJ like {ECO:0000313|EMBL:GAO53761.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hemolysin A
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6376..6969
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4W7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53762.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7405..8505
DNA (1101bp) protein (367aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:GAO53763.1}; EC=2.6.1.42 {ECO:0000313|EMBL:GAO53763.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4W6_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8637..10088)
DNA (1452bp) protein (484aa)
Putative porin n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2X0_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:GAO53764.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative porin
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10383..11291
DNA (909bp) protein (303aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4W4_NOVAD
Oxidoreductase of short chain dehydrogenase/reductase family {ECO:0000313|EMBL:GAO53765.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11399..12010
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000370D97F
Uncharacterized protein {ECO:0000313|EMBL:GAO53766.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative membrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11964..12428)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53767.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12367..12672)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B51506
Uncharacterized protein {ECO:0000313|EMBL:GAO53768.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12747..13469)
DNA (723bp) protein (241aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9X6_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13496..14137)
DNA (642bp) protein (214aa)
ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9X7_NOVAD
Chromosomal replication initiator protein dnaA {ECO:0000313|EMBL:GAO53770.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14183..15448)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9X8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53771.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15579..16688
DNA (1110bp) protein (370aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|SAAS:SAAS00245445}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|SAAS:SAAS00245411};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PUR5_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16681..17622
DNA (942bp) protein (314aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5B27C
phosphoribosylglycinamide formyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17692..19140
DNA (1449bp) protein (483aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZZ0_9SPHN
Cardiolipin synthetase {ECO:0000313|EMBL:GAO53774.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19144..19383)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G515_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53775.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19488..19910)
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=NDK_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20009..20455)
DNA (447bp) protein (149aa)
DNA polymerase III chi subunit {ECO:0000313|EMBL:GAO53777.1}; EC=2.7.7.7 {ECO:0000313|EMBL:GAO53777.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA polymerase III subunit chi n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B67026
DNA polymerase III chi subunit, HolC
2019_SCN_bioreactor_t3_biofilm_scaffold_65537_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20495..21952)
DNA (1458bp) protein (486aa)
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Y8_NOVAD
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 24 items

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