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2019_SCN_bioreactor_t3_biofilm_scaffold_23891

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..626
DNA (624bp) protein (208aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Transcription termination factor Rho n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5R9_9SPHN
rho; transcription termination factor Rho
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(692..1075)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC34_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54357.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1165..1863)
DNA (699bp) protein (233aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC35_NOVAD
Dienelactone hydrolase family {ECO:0000313|EMBL:GAO54358.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1992..2270
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6F7BE
Uncharacterized protein {ECO:0000313|EMBL:GAO54359.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2348..3637
DNA (1290bp) protein (430aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA modification GTPase MnmE n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=MNME_NOVAD
trmE; tRNA modification GTPase TrmE
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3709..5553
DNA (1845bp) protein (615aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=MNMG_NOVAD
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5550..6233
DNA (684bp) protein (228aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
16S rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3D5E9
methyltransferase GidB
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6525..6872
DNA (348bp) protein (116aa)
Chromosome segregation ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC40_NOVAD
Chromosome (Plasmid) partitioning protein parA {ECO:0000313|EMBL:GAO54363.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chromosome segregation ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6869..7831
DNA (963bp) protein (321aa)
Chromosome segregation DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5R1_9SPHN
Chromosome (Plasmid) partitioning protein parB {ECO:0000313|EMBL:GAO54364.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chromosome segregation DNA-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8100..9089
DNA (990bp) protein (330aa)
Short-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54365.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO54365.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
long-chain acyl-CoA dehydrogenase (EC:1.3.99.13)
Long-chain acyl-CoA dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC42_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9248..9901)
DNA (654bp) protein (218aa)
17 kDa surface antigen n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC43_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54366.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
17 kDa surface antigen
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10040..10522)
DNA (483bp) protein (161aa)
Putative GAF sensor protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC44_NOVAD
Free methionine-(R)-sulfoxide reductase, contains GAF domain {ECO:0000313|EMBL:GAO54367.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GAF sensor protein
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10610..12073
DNA (1464bp) protein (488aa)
L-sorbosone dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC45_NOVAD
L-sorbosone dehydrogenase {ECO:0000313|EMBL:GAO54368.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
L-sorbosone dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12102..12923)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC46_NOVAD
ATP-DEPENDENT PROTEASE SUBUNIT {ECO:0000313|EMBL:GAO54369.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12920..14638)
DNA (1719bp) protein (573aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54370.1}; EC=1.3.8.7 {ECO:0000313|EMBL:GAO54370.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC47_NOVAD
acyl-CoA dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_23891_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14699..15181
DNA (483bp) protein (161aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Translation factor SUA5 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC48_NOVAD
translation factor SUA5
Displaying 16 items

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