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2019_SCN_bioreactor_t3_biofilm_scaffold_24712

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103..1185)
DNA (1083bp) protein (361aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7Q6_9SPHN
chemotaxis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1182..2054)
DNA (873bp) protein (291aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chemotaxis protein CheR n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B73408
chemotaxis protein CheR
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2051..4228)
DNA (2178bp) protein (726aa)
CheA signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Q4_9SPHN
Signal transduction histidine kinase cheA {ECO:0000313|EMBL:GAO55244.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chemotaxis protein CheA
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4225..4485)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B40824
Uncharacterized protein {ECO:0000313|EMBL:GAO55245.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4754..5740
DNA (987bp) protein (329aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two-component system, chemotaxis family,response regulator CheB (EC:3.1.1.61)
Response regulator receiver modulated CheB methylesterase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7Q2_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5934..6314)
DNA (381bp) protein (127aa)
flagellin n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B33E58
Uncharacterized protein {ECO:0000313|EMBL:GAO55247.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellin-specific chaperone FliS-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6314..7780)
DNA (1467bp) protein (489aa)
flagellar hook protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6DB29
Flagellar hook-associated protein fliD {ECO:0000313|EMBL:GAO55248.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar hook-associated protein 2
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7826..8965)
DNA (1140bp) protein (380aa)
flagellar biosynthesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B452C0
Flagellar biosynthesis protein flhB {ECO:0000313|EMBL:GAO55249.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biosynthesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8976..9347)
DNA (372bp) protein (124aa)
Flagellar biosynthetic protein fliR n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P9_9SPHN
Flagellar biosynthesis protein fliR {ECO:0000313|EMBL:GAO55250.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biosynthetic protein FliR
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9527..9799)
DNA (273bp) protein (91aa)
Flagellar biosynthetic protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P8_9SPHN
Flagellar biosynthesis protein fliQ {ECO:0000313|EMBL:GAO55251.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biosynthetic protein FliQ
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9813..10685)
DNA (873bp) protein (291aa)
Flagellar biosynthesis protein FliP n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P7_9SPHN
Flagellar biosynthesis protein fliP {ECO:0000313|EMBL:GAO55252.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biosynthesis protein flip
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10714..11004)
DNA (291bp) protein (97aa)
flagellar biogenesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B675F2
Uncharacterized protein {ECO:0000313|EMBL:GAO55253.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biogenesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11004..11258)
DNA (255bp) protein (85aa)
flagellar motor switch protein FliN n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3CCFB
Flagellar motor switch protein fliN {ECO:0000313|EMBL:GAO55254.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor switch protein FliN/FliY
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11295..12191)
DNA (897bp) protein (299aa)
flagellar motor switch protein FliM n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B653B1
Uncharacterized protein {ECO:0000313|EMBL:GAO55255.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor switch protein FliM
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12199..12792)
DNA (594bp) protein (198aa)
Flagellar basal body-associated protein FliL n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P3_9SPHN
Flagellar protein {ECO:0000313|EMBL:GAO55256.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar basal body-associated protein FliL
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12834..13103)
DNA (270bp) protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO55257.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13100..14062)
DNA (963bp) protein (321aa)
Tsp1 domain-containing protein TSP12 (Precursor),related, related n=1 Tax=Eimeria tenella RepID=U6KKV1_EIMTE
Uncharacterized protein {ECO:0000313|EMBL:GAO55257.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
baaA1; trimeric autotransporter adhesin
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14092..14523)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J7E2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55258.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14513..15883)
DNA (1371bp) protein (457aa)
fliI; ATP synthase (EC:3.6.3.14)
FliI/YscN family ATPase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P1_9SPHN
Flagellum-specific ATP synthase fliI {ECO:0000313|EMBL:GAO55259.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15877..16518)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7P0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55260.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar biosynthesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16511..17521)
DNA (1011bp) protein (337aa)
Flagellar motor switch protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7N9_9SPHN
Flagellar motor switch protein fliG {ECO:0000313|EMBL:GAO55261.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor switch protein FliG
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17518..19257)
DNA (1740bp) protein (580aa)
flagellar M-ring protein FliF n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37AC0
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar M-ring protein FliF
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19261..19638)
DNA (378bp) protein (126aa)
flagellar hook-basal body protein FliE n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F301
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar hook-basal body protein FliE
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19635..19898)
DNA (264bp) protein (88aa)
Fis family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6C7B0
Sigma-54 dependent DNA-binding response regulator fleR {ECO:0000313|EMBL:GAO55264.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Fis family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19924..20811)
DNA (888bp) protein (296aa)
Sigma-54 dependent transcriptional regulator n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7N6_9SPHN
Sigma-54 dependent DNA-binding response regulator fleR {ECO:0000313|EMBL:GAO55264.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Fis family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21011..21868
DNA (858bp) protein (286aa)
Flagellin n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXR3_9SPHN
Flagellin protein flaA {ECO:0000313|EMBL:GAO55265.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellin
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22006..23760
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CXN0_SPHYA
Chloride channel protein {ECO:0000313|EMBL:GAO55266.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chloride core
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23771..24610)
DNA (840bp) protein (280aa)
flagellar motor protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B76116
Flagellar motor rotation protein motB {ECO:0000313|EMBL:GAO55267.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor protein
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24625..25488)
DNA (864bp) protein (288aa)
Flagellar motor protein MotA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7N0_9SPHN
Flagellar motor rotation protein motA {ECO:0000313|EMBL:GAO55268.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor protein MotA
2019_SCN_bioreactor_t3_biofilm_scaffold_24712_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25610..26452)
DNA (843bp) protein (281aa)
flagellar hook protein FlgL n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46AFF
Flagellar hook-associated protein flgL {ECO:0000313|EMBL:GAO55269.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar hook-associated protein FlgL
Displaying items 1-30 of 49 in total

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