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2019_SCN_bioreactor_t3_biofilm_scaffold_59112

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..332
DNA (330bp) protein (110aa)
Type II secretion system protein N n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z0_NOVAD
General secretion pathway protein N {ECO:0000313|EMBL:GAO53855.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
type II secretion system protein N
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(342..797)
DNA (456bp) protein (152aa)
DNA-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B77636
Uncharacterized protein {ECO:0000313|EMBL:GAO53854.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ferritin
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(931..1044)
DNA (114bp) protein (38aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53853.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1128..2498
DNA (1371bp) protein (457aa)
Bacteriophage N4 adsorption protein B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z3_NOVAD
Glycosyltransferases {ECO:0000313|EMBL:GAO53849.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
bacteriophage N4 adsorption protein B
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2495..3649
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3S6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53848.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3731..4645
DNA (915bp) protein (305aa)
permease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6260E
Uncharacterized protein {ECO:0000313|EMBL:GAO53847.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4642..5403
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53846.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5513..7081
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53845.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7101..8567)
DNA (1467bp) protein (489aa)
MATE efflux family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z8_NOVAD
Multidrug and toxin extrusion (MATE) family efflux pump ydhE/norM, homolog {ECO:0000313|EMBL:GAO53844.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MATE efflux family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9295..9828)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G500_NOVAD
Ubiquinol-cytochrome C chaperone {ECO:0000313|EMBL:GAO53842.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10045..10542
DNA (498bp) protein (166aa)
SmpA/OmlA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G501_NOVAD
Outer membrane lipoprotein omlA {ECO:0000313|EMBL:GAO53841.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SmpA/OmlA
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10598..11167
DNA (570bp) protein (190aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATP-dependent protease subunit HslV n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G502_NOVAD
ATP-dependent protease peptidase subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11263..12564
DNA (1302bp) protein (434aa)
ATP-dependent protease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3A201
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hslU; ATP-dependent protease ATP-binding subunit HslU
2019_SCN_bioreactor_t3_biofilm_scaffold_59112_14
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12676..13041)
DNA (366bp) protein (122aa)
Excinuclease ABC subunit C n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVY6_9SPHN
Excinuclease ABC subunit C {ECO:0000313|EMBL:EZP81681.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
excinuclease ABC subunit C
Displaying 14 items

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