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2019_SCN_bioreactor_t3_biofilm_scaffold_151352

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..142)
DNA (141bp) protein (47aa)
Ribosome-binding ATPase YchF n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z912_9SPHN
ychF; GTP-dependent nucleic acid-binding protein EngD
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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276..2291
DNA (2016bp) protein (672aa)
TPR repeat protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6G6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56454.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TPR repeat-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2362..2931)
DNA (570bp) protein (190aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PTH_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3111..3719)
DNA (609bp) protein (203aa)
50S ribosomal protein L25 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL25_NOVAD
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
50S ribosomal protein L25
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3876..4793)
DNA (918bp) protein (306aa)
conjugative transfer protein GumN n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5FA4E
Uncharacterized protein {ECO:0000313|EMBL:GAO56450.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GumN
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4790..5746)
DNA (957bp) protein (319aa)
GumN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6H1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56449.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GumN
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5876..6793
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6H2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6887..9250
DNA (2364bp) protein (788aa)
glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Glycyl-tRNA synthetase beta chain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6H3_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_151352_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9338..9496
DNA (159bp) protein (53aa)
Pyruvate,phosphate dikinase {ECO:0000313|EMBL:GAO56446.1}; EC=2.7.9.1 {ECO:0000313|EMBL:GAO56446.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
pyruvate phosphate dikinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6F5B1
Displaying 9 items

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